RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, human

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPRF-215	ENST00000496447	DNAJC17	Q9NVM6	304 aa	Known RBP	14	□□□□□ -0.17
PTPRF-215	ENST00000496447	HACD3	Q9P035	362 aa		14	□□□□□ -0.17
PTPRF-215	ENST00000496447	MIF4GD	A9UHW6	222 aa	Known RBP	14	□□□□□ -0.17
PTPRF-215	ENST00000496447	GGPS1	O95749	300 aa		14	□□□□□ -0.17
PTPRF-215	ENST00000496447	NSUN2	Q08J23	767 aa	Known RBP eCLIP	14	□□□□□ -0.17
PTPRF-215	ENST00000496447	BAAT	Q14032	418 aa	Predicted RBP	14	□□□□□ -0.17
PTPRF-215	ENST00000496447	ZNF34	Q8IZ26	560 aa		14	□□□□□ -0.17
PTPRF-215	ENST00000496447	MARCH10	Q8NA82	808 aa	Predicted RBP	14	□□□□□ -0.17
PTPRF-215	ENST00000496447	ANKRD7	Q92527	254 aa		14	□□□□□ -0.17
PTPRF-215	ENST00000496447	MTMR4	Q9NYA4	1195 aa		14	□□□□□ -0.17
PTPRF-215	ENST00000496447	SUCLA2	Q9P2R7	463 aa	Predicted RBP	14	□□□□□ -0.17
PTPRF-215	ENST00000496447	EPS15L1	Q9UBC2	864 aa		14	□□□□□ -0.17
PTPRF-215	ENST00000496447	PRKCB	P05771	671 aa		14	□□□□□ -0.17
PTPRF-215	ENST00000496447	EFHC2	Q5JST6	749 aa		14	□□□□□ -0.17
PTPRF-215	ENST00000496447	TMCO4	Q5TGY1	634 aa		14	□□□□□ -0.17
PTPRF-215	ENST00000496447	ATG9A	Q7Z3C6	839 aa		14	□□□□□ -0.17
PTPRF-215	ENST00000496447	WHAMM	Q8TF30	809 aa		14	□□□□□ -0.17
PTPRF-215	ENST00000496447	LRRC53	A6NM62	1247 aa		14	□□□□□ -0.17
PTPRF-215	ENST00000496447	PP2D1	A8MPX8	630 aa		14	□□□□□ -0.17
PTPRF-215	ENST00000496447	HSPA8	P11142	646 aa	Known RBP	14	□□□□□ -0.17
PTPRF-215	ENST00000496447	RALA	P11233	206 aa		14	□□□□□ -0.17
PTPRF-215	ENST00000496447	GMPS	P49915	693 aa	Predicted RBP	14	□□□□□ -0.17
PTPRF-215	ENST00000496447	DUOXA2	Q1HG44	320 aa		14	□□□□□ -0.17
PTPRF-215	ENST00000496447	BTBD8	Q5XKL5	378 aa		14	□□□□□ -0.17
PTPRF-215	ENST00000496447	CDC42EP5	Q6NZY7	148 aa		14	□□□□□ -0.17
PTPRF-215	ENST00000496447	HAUS6	Q7Z4H7	955 aa		14	□□□□□ -0.17
PTPRF-215	ENST00000496447	PPP2R3C	Q969Q6	453 aa		14	□□□□□ -0.17
PTPRF-215	ENST00000496447	SP110	Q9HB58	689 aa		14	□□□□□ -0.17
PTPRF-215	ENST00000496447	KDM6A	O15550	1401 aa	Predicted RBP	13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	CYP2B6	P20813	491 aa		13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	LBHD1	Q9BQE6	289 aa	Predicted RBP	13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	PCSK1N	Q9UHG2	260 aa		13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	SLC13A4	Q9UKG4	626 aa		13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	DRP2	Q13474	957 aa		13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	EDEM3	Q9BZQ6	932 aa		13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	ZMYND12	Q9H0C1	365 aa		13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	GPBP1L1	Q9HC44	474 aa	Predicted RBP	13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	MRFAP1	Q9Y605	127 aa		13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	SYNGAP1	Q96PV0	1343 aa		13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	TRAPPC3	O43617	180 aa		13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	CTSH	P09668	335 aa		13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	CA4	P22748	312 aa		13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	ARL4C	P56559	192 aa		13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	HHIPL2	Q6UWX4	724 aa		13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	TUFT1	Q9NNX1	390 aa		13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	G3BP2	Q9UN86	482 aa	Known RBP	13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	RNF17	Q9BXT8	1623 aa	Known RBP	13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	PALM	O75781	387 aa		13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	NDUFB10	O96000	172 aa		13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	GH1	P01241	217 aa		13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	CDC42EP1	Q00587	391 aa		13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	NAALADL2	Q58DX5	795 aa		13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	STYK1	Q6J9G0	422 aa		13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	SGMS1	Q86VZ5	419 aa		13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	GTF3C2	Q8WUA4	911 aa	Predicted RBP	13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	PPWD1	Q96BP3	646 aa	Known RBP	13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	SPON2	Q9BUD6	331 aa		13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	CNOT10	Q9H9A5	744 aa	Known RBP	13.99	□□□□□ -0.17
PTPRF-215	ENST00000496447	DPEP1	P16444	411 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	FBXO41	Q8TF61	875 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	MAGEB5	Q9BZ81	275 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	SAYSD1	Q9NPB0	183 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	WDR91	A4D1P6	747 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	EYA4	O95677	639 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	HUNK	P57058	714 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	HIBCH	Q6NVY1	386 aa	Predicted RBP	13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	BARGIN	Q6ZT62	677 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	ASIC4	Q96FT7	647 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	CALR3	Q96L12	384 aa	Known RBP	13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	TRIM62	Q9BVG3	475 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	HMGB1P1	B2RPK0	211 aa	Predicted RBP	13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	SNX2	O60749	519 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	ZNF543	Q08ER8	600 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	PRAMEF18	Q5VWM3	479 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	ABTB1	Q969K4	478 aa	Predicted RBP	13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	DTNBP1	Q96EV8	351 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	NUP85	Q9BW27	656 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	SMARCAD1	Q9H4L7	1026 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	ORC6	Q9Y5N6	252 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	DRAP1	Q14919	205 aa	Predicted RBP	13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	SCYL3	Q8IZE3	742 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	ZNF564	Q8TBZ8	553 aa	Predicted RBP	13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	SCG3	Q8WXD2	468 aa	Known RBP	13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	KLHL29	Q96CT2	875 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	TNIP3	Q96KP6	325 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	ABCB6	Q9NP58	842 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	CYP26B1	Q9NR63	512 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	CCL15-CCL14	A0A0B4J2E2	113 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	KRT37	O76014	449 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	ACSL3	O95573	720 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	RAD51	Q06609	339 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	CCL15	Q16663	113 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	RABL6	Q3YEC7	729 aa	Predicted RBP	13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	FAM151A	Q8WW52	585 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	MYOZ2	Q9NPC6	264 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	IP6K2	Q9UHH9	426 aa		13.98	□□□□□ -0.17
PTPRF-215	ENST00000496447	LAMC1	P11047	1609 aa		13.97	□□□□□ -0.17

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