RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 NRDE2Q9H7Z3 1164 aa14.17□□□□□ -0.14
PTPRF-214ENST00000496043 UBN1Q9NPG3 1134 aa14.17□□□□□ -0.14
PTPRF-214ENST00000496043 TBC1D13Q9NVG8 400 aa14.17□□□□□ -0.14
PTPRF-214ENST00000496043 BARX2Q9UMQ3 279 aaPredicted RBP14.17□□□□□ -0.14
PTPRF-214ENST00000496043 NOL7Q9UMY1 257 aaKnown RBP14.17□□□□□ -0.14
PTPRF-214ENST00000496043 BDP1A6H8Y1 2624 aa14.16□□□□□ -0.14
PTPRF-214ENST00000496043 MEIS3P2A8K0S8 358 aa14.16□□□□□ -0.14
PTPRF-214ENST00000496043 HIDE1A8MVS5 230 aa14.16□□□□□ -0.14
PTPRF-214ENST00000496043 ZC3H11AO75152 810 aaKnown RBP eCLIP14.16□□□□□ -0.14
PTPRF-214ENST00000496043 GLP2RO95838 553 aa14.16□□□□□ -0.14
PTPRF-214ENST00000496043 ALDH2P05091 517 aa14.16□□□□□ -0.14
PTPRF-214ENST00000496043 GALTP07902 379 aa14.16□□□□□ -0.14
PTPRF-214ENST00000496043 OR52Z1P0C646 297 aa14.16□□□□□ -0.14
PTPRF-214ENST00000496043 ITGA4P13612 1032 aa14.16□□□□□ -0.14
PTPRF-214ENST00000496043 NCLP19338 710 aaKnown RBP14.16□□□□□ -0.14
PTPRF-214ENST00000496043 RABEP1Q15276 862 aa14.16□□□□□ -0.14
PTPRF-214ENST00000496043 TTC38Q5R3I4 469 aa14.16□□□□□ -0.14
PTPRF-214ENST00000496043 UBXN11Q5T124 520 aa14.16□□□□□ -0.14
PTPRF-214ENST00000496043 TMEM87AQ8NBN3 555 aa14.16□□□□□ -0.14
PTPRF-214ENST00000496043 SMRP1Q8NCR6 262 aa14.16□□□□□ -0.14
PTPRF-214ENST00000496043 ASAP3Q8TDY4 903 aa14.16□□□□□ -0.14
PTPRF-214ENST00000496043 FAM193BQ96PV7 902 aaPredicted RBP14.16□□□□□ -0.14
PTPRF-214ENST00000496043 GBP3Q9H0R5 595 aa14.16□□□□□ -0.14
PTPRF-214ENST00000496043 RSAD1Q9HA92 442 aa14.16□□□□□ -0.14
PTPRF-214ENST00000496043 DBR1Q9UK59 544 aaKnown RBP14.16□□□□□ -0.14
PTPRF-214ENST00000496043 CNTNAP2Q9UHC6 1331 aa14.15□□□□□ -0.14
PTPRF-214ENST00000496043 ST18O60284 1047 aa14.15□□□□□ -0.14
PTPRF-214ENST00000496043 TSPAN1O60635 241 aa14.15□□□□□ -0.14
PTPRF-214ENST00000496043 USO1O60763 962 aaKnown RBP14.15□□□□□ -0.14
PTPRF-214ENST00000496043 MED24O75448 989 aa14.15□□□□□ -0.14
PTPRF-214ENST00000496043 GLRA2P23416 452 aa14.15□□□□□ -0.14
PTPRF-214ENST00000496043 U2AF2P26368 475 aaKnown RBP eCLIP14.15□□□□□ -0.14
PTPRF-214ENST00000496043 RPA1P27694 616 aa14.15□□□□□ -0.14
PTPRF-214ENST00000496043 CA8P35219 290 aa14.15□□□□□ -0.14
PTPRF-214ENST00000496043 CAPSQ13938 189 aa14.15□□□□□ -0.14
PTPRF-214ENST00000496043 GIT2Q14161 759 aa14.15□□□□□ -0.14
PTPRF-214ENST00000496043 NOTUMQ6P988 496 aa14.15□□□□□ -0.14
PTPRF-214ENST00000496043 MAEAQ7L5Y9 396 aa14.15□□□□□ -0.14
PTPRF-214ENST00000496043 DDX53Q86TM3 631 aaKnown RBP14.15□□□□□ -0.14
PTPRF-214ENST00000496043 ZNF280BQ86YH2 543 aa14.15□□□□□ -0.14
PTPRF-214ENST00000496043 VPS52Q8N1B4 723 aa14.15□□□□□ -0.14
PTPRF-214ENST00000496043 MCPH1Q8NEM0 835 aa14.15□□□□□ -0.14
PTPRF-214ENST00000496043 CCDC51Q96ER9 411 aa14.15□□□□□ -0.14
PTPRF-214ENST00000496043 IGSF21Q96ID5 467 aa14.15□□□□□ -0.14
PTPRF-214ENST00000496043 NFKBIZQ9BYH8 718 aa14.15□□□□□ -0.14
PTPRF-214ENST00000496043 CSRNP2Q9H175 543 aa14.15□□□□□ -0.14
PTPRF-214ENST00000496043 POLR3FQ9H1D9 316 aaPredicted RBP14.15□□□□□ -0.14
PTPRF-214ENST00000496043 UPF2Q9HAU5 1272 aaKnown RBP14.15□□□□□ -0.14
PTPRF-214ENST00000496043 STK39Q9UEW8 545 aa14.15□□□□□ -0.14
PTPRF-214ENST00000496043 FAN1Q9Y2M0 1017 aa14.15□□□□□ -0.14
PTPRF-214ENST00000496043 KIF3AQ9Y496 699 aa14.15□□□□□ -0.14
PTPRF-214ENST00000496043 KIAA1671Q9BY89 1806 aa14.15□□□□□ -0.14
PTPRF-214ENST00000496043 C2orf71A6NGG8 1288 aa14.14□□□□□ -0.15
PTPRF-214ENST00000496043 DCXO43602 365 aa14.14□□□□□ -0.15
PTPRF-214ENST00000496043 DDHD2O94830 711 aa14.14□□□□□ -0.15
PTPRF-214ENST00000496043 HOXB8P17481 243 aaPredicted RBP14.14□□□□□ -0.15
PTPRF-214ENST00000496043 MUTP22033 750 aa14.14□□□□□ -0.15
PTPRF-214ENST00000496043 SLC11A1P49279 550 aa14.14□□□□□ -0.15
PTPRF-214ENST00000496043 RBM10P98175 930 aaKnown RBP14.14□□□□□ -0.15
PTPRF-214ENST00000496043 MBTD1Q05BQ5 628 aa14.14□□□□□ -0.15
PTPRF-214ENST00000496043 KCNC3Q14003 757 aa14.14□□□□□ -0.15
PTPRF-214ENST00000496043 PDIA5Q14554 519 aa14.14□□□□□ -0.15
PTPRF-214ENST00000496043 ANKRD54Q6NXT1 300 aa14.14□□□□□ -0.15
PTPRF-214ENST00000496043 LLGL2Q6P1M3 1020 aa14.14□□□□□ -0.15
PTPRF-214ENST00000496043 C4orf32Q8N8J7 132 aa14.14□□□□□ -0.15
PTPRF-214ENST00000496043 SMG8Q8ND04 991 aaKnown RBP14.14□□□□□ -0.15
PTPRF-214ENST00000496043 VN1R2Q8NFZ6 395 aa14.14□□□□□ -0.15
PTPRF-214ENST00000496043 CASP10Q92851 521 aa14.14□□□□□ -0.15
PTPRF-214ENST00000496043 CPB2Q96IY4 423 aa14.14□□□□□ -0.15
PTPRF-214ENST00000496043 TMEM175Q9BSA9 504 aa14.14□□□□□ -0.15
PTPRF-214ENST00000496043 S1PR5Q9H228 398 aa14.14□□□□□ -0.15
PTPRF-214ENST00000496043 USP15Q9Y4E8 981 aaPredicted RBP14.14□□□□□ -0.15
PTPRF-214ENST00000496043 IPPQ9Y573 584 aa14.14□□□□□ -0.15
PTPRF-214ENST00000496043 STK24Q9Y6E0 443 aa14.14□□□□□ -0.15
PTPRF-214ENST00000496043 PLXNA4Q9HCM2 1894 aa14.13□□□□□ -0.15
PTPRF-214ENST00000496043 ARHGEF35A5YM69 484 aa14.13□□□□□ -0.15
PTPRF-214ENST00000496043 CLASP2O75122 1294 aaKnown RBP14.13□□□□□ -0.15
PTPRF-214ENST00000496043 POMCP01189 267 aa14.13□□□□□ -0.15
PTPRF-214ENST00000496043 FXR2P51116 673 aaKnown RBP eCLIP14.13□□□□□ -0.15
PTPRF-214ENST00000496043 AMHR2Q16671 573 aa14.13□□□□□ -0.15
PTPRF-214ENST00000496043 HAUS3Q68CZ6 603 aa14.13□□□□□ -0.15
PTPRF-214ENST00000496043 HACE1Q8IYU2 909 aa14.13□□□□□ -0.15
PTPRF-214ENST00000496043 PHF7Q9BWX1 381 aaPredicted RBP14.13□□□□□ -0.15
PTPRF-214ENST00000496043 EIF2AQ9BY44 585 aaKnown RBP14.13□□□□□ -0.15
PTPRF-214ENST00000496043 TRIM6Q9C030 488 aaPredicted RBP14.13□□□□□ -0.15
PTPRF-214ENST00000496043 GPRC5CQ9NQ84 441 aa14.13□□□□□ -0.15
PTPRF-214ENST00000496043 DNAJB4Q9UDY4 337 aa14.13□□□□□ -0.15
PTPRF-214ENST00000496043 LRWD1Q9UFC0 647 aa14.13□□□□□ -0.15
PTPRF-214ENST00000496043 A0A1B0GUA9 196 aa14.12□□□□□ -0.15
PTPRF-214ENST00000496043 FAM86C2PA6NEL3 165 aa14.12□□□□□ -0.15
PTPRF-214ENST00000496043 LRRIQ4A6NIV6 560 aa14.12□□□□□ -0.15
PTPRF-214ENST00000496043 NRP1O14786 923 aa14.12□□□□□ -0.15
PTPRF-214ENST00000496043 CTSAP10619 480 aa14.12□□□□□ -0.15
PTPRF-214ENST00000496043 ARF4P18085 180 aaPredicted RBP14.12□□□□□ -0.15
PTPRF-214ENST00000496043 CYP11B2P19099 503 aa14.12□□□□□ -0.15
PTPRF-214ENST00000496043 CCT6AP40227 531 aaKnown RBP14.12□□□□□ -0.15
PTPRF-214ENST00000496043 AFF1P51825 1210 aaKnown RBP14.12□□□□□ -0.15
PTPRF-214ENST00000496043 PTGDRQ13258 359 aa14.12□□□□□ -0.15
PTPRF-214ENST00000496043 TPRNQ4KMQ1 711 aa14.12□□□□□ -0.15
PTPRF-214ENST00000496043 SYCE2Q6PIF2 218 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms