RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 RD3Q7Z3Z2 195 aa6.03□□□□□ -1.44
VPS50-219ENST00000495039 UNC5BQ8IZJ1 945 aa6.03□□□□□ -1.44
VPS50-219ENST00000495039 SOX7Q9BT81 388 aa6.03□□□□□ -1.44
VPS50-219ENST00000495039 CPEB1Q9BZB8 566 aaKnown RBP6.03□□□□□ -1.44
VPS50-219ENST00000495039 TMEM200CA6NKL6 621 aa6.02□□□□□ -1.45
VPS50-219ENST00000495039 ALDH1A2O94788 518 aa6.02□□□□□ -1.45
VPS50-219ENST00000495039 PRPF6O94906 941 aaKnown RBP6.02□□□□□ -1.45
VPS50-219ENST00000495039 APOBEC3AP31941 199 aaPredicted RBP6.02□□□□□ -1.45
VPS50-219ENST00000495039 CLK3P49761 638 aaKnown RBP6.02□□□□□ -1.45
VPS50-219ENST00000495039 NAALADL2Q58DX5 795 aa6.02□□□□□ -1.45
VPS50-219ENST00000495039 ESRP1Q6NXG1 681 aaKnown RBP6.02□□□□□ -1.45
VPS50-219ENST00000495039 LCORLQ8N3X6 602 aa6.02□□□□□ -1.45
VPS50-219ENST00000495039 OR5M3Q8NGP4 307 aa6.02□□□□□ -1.45
VPS50-219ENST00000495039 DCLRE1CQ96SD1 692 aaKnown RBP6.02□□□□□ -1.45
VPS50-219ENST00000495039 MYL10Q9BUA6 226 aa6.02□□□□□ -1.45
VPS50-219ENST00000495039 TRPM5Q9NZQ8 1165 aa6.02□□□□□ -1.45
VPS50-219ENST00000495039 ANKFY1Q9P2R3 1169 aa6.02□□□□□ -1.45
VPS50-219ENST00000495039 HDAC5Q9UQL6 1122 aa6.02□□□□□ -1.45
VPS50-219ENST00000495039 GAGE12BA1L429 117 aa6.01□□□□□ -1.45
VPS50-219ENST00000495039 GAGE12HA6NDE8 117 aa6.01□□□□□ -1.45
VPS50-219ENST00000495039 RNASET2O00584 256 aaKnown RBP6.01□□□□□ -1.45
VPS50-219ENST00000495039 PLD2O14939 933 aa6.01□□□□□ -1.45
VPS50-219ENST00000495039 CDK4P11802 303 aa6.01□□□□□ -1.45
VPS50-219ENST00000495039 FAM189BP81408 668 aa6.01□□□□□ -1.45
VPS50-219ENST00000495039 CCDC62Q6P9F0 684 aa6.01□□□□□ -1.45
VPS50-219ENST00000495039 DOK3Q7L591 496 aa6.01□□□□□ -1.45
VPS50-219ENST00000495039 GDF7Q7Z4P5 450 aa6.01□□□□□ -1.45
VPS50-219ENST00000495039 ARHGEF19Q8IW93 802 aa6.01□□□□□ -1.45
VPS50-219ENST00000495039 LILRA3Q8N6C8 439 aaPredicted RBP6.01□□□□□ -1.45
VPS50-219ENST00000495039 PPP1R14CQ8TAE6 165 aa6.01□□□□□ -1.45
VPS50-219ENST00000495039 IL17RAQ96F46 866 aa6.01□□□□□ -1.45
VPS50-219ENST00000495039 WDR11Q9BZH6 1224 aa6.01□□□□□ -1.45
VPS50-219ENST00000495039 AKIP1Q9NQ31 210 aa6.01□□□□□ -1.45
VPS50-219ENST00000495039 OPA1O60313 960 aa6□□□□□ -1.45
VPS50-219ENST00000495039 NCR1O76036 304 aa6□□□□□ -1.45
VPS50-219ENST00000495039 CFBP00751 764 aa6□□□□□ -1.45
VPS50-219ENST00000495039 ASLP04424 464 aa6□□□□□ -1.45
VPS50-219ENST00000495039 SLC9A1P19634 815 aa6□□□□□ -1.45
VPS50-219ENST00000495039 CASRP41180 1078 aa6□□□□□ -1.45
VPS50-219ENST00000495039 C2orf27AQ580R0 203 aa6□□□□□ -1.45
VPS50-219ENST00000495039 ZZZ3Q8IYH5 903 aa6□□□□□ -1.45
VPS50-219ENST00000495039 PIK3C3Q8NEB9 887 aa6□□□□□ -1.45
VPS50-219ENST00000495039 ZNF428Q96B54 188 aa6□□□□□ -1.45
VPS50-219ENST00000495039 SRPK1Q96SB4 655 aaKnown RBP6□□□□□ -1.45
VPS50-219ENST00000495039 ELF4Q99607 663 aaPredicted RBP6□□□□□ -1.45
VPS50-219ENST00000495039 LSM14BQ9BX40 385 aaKnown RBP6□□□□□ -1.45
VPS50-219ENST00000495039 R3HDMLQ9H3Y0 253 aa6□□□□□ -1.45
VPS50-219ENST00000495039 POFUT1Q9H488 388 aa6□□□□□ -1.45
VPS50-219ENST00000495039 SYBUQ9NX95 663 aa6□□□□□ -1.45
VPS50-219ENST00000495039 B4GALT6Q9UBX8 382 aa6□□□□□ -1.45
VPS50-219ENST00000495039 CLCA2Q9UQC9 943 aa6□□□□□ -1.45
VPS50-219ENST00000495039 PTCH2Q9Y6C5 1203 aa6□□□□□ -1.45
VPS50-219ENST00000495039 GTF2F1P35269 517 aaKnown RBP eCLIP5.99□□□□□ -1.45
VPS50-219ENST00000495039 PTTG1IPP53801 180 aa5.99□□□□□ -1.45
VPS50-219ENST00000495039 KRTAP10-11P60412 298 aa5.99□□□□□ -1.45
VPS50-219ENST00000495039 MRPL49Q13405 166 aaKnown RBP5.99□□□□□ -1.45
VPS50-219ENST00000495039 ERCC6LQ2NKX8 1250 aa5.99□□□□□ -1.45
VPS50-219ENST00000495039 UNQ6494/PRO21346Q6UXR6 183 aa5.99□□□□□ -1.45
VPS50-219ENST00000495039 PLXDC1Q8IUK5 500 aa5.99□□□□□ -1.45
VPS50-219ENST00000495039 ARMC5Q96C12 935 aa5.99□□□□□ -1.45
VPS50-219ENST00000495039 COQ10AQ96MF6 247 aa5.99□□□□□ -1.45
VPS50-219ENST00000495039 IGSF5Q9NSI5 407 aa5.99□□□□□ -1.45
VPS50-219ENST00000495039 INSL6Q9Y581 213 aa5.99□□□□□ -1.45
VPS50-219ENST00000495039 SPO11Q9Y5K1 396 aa5.99□□□□□ -1.45
VPS50-219ENST00000495039 SPATA31A6Q5VVP1 1343 aa5.99□□□□□ -1.45
VPS50-219ENST00000495039 INO80B-WBP1J3KQ70 363 aa5.98□□□□□ -1.45
VPS50-219ENST00000495039 RAPGEF3O95398 923 aa5.98□□□□□ -1.45
VPS50-219ENST00000495039 TYRP1P17643 537 aa5.98□□□□□ -1.45
VPS50-219ENST00000495039 GZMKP49863 264 aa5.98□□□□□ -1.45
VPS50-219ENST00000495039 PIK3R6Q5UE93 754 aa5.98□□□□□ -1.45
VPS50-219ENST00000495039 CMTR2Q8IYT2 770 aaKnown RBP5.98□□□□□ -1.45
VPS50-219ENST00000495039 NELL1Q92832 810 aa5.98□□□□□ -1.45
VPS50-219ENST00000495039 CAVIN3Q969G5 261 aa5.98□□□□□ -1.45
VPS50-219ENST00000495039 INO80BQ9C086 356 aaPredicted RBP5.98□□□□□ -1.45
VPS50-219ENST00000495039 TOMM22Q9NS69 142 aa5.98□□□□□ -1.45
VPS50-219ENST00000495039 CHST2Q9Y4C5 530 aa5.98□□□□□ -1.45
VPS50-219ENST00000495039 PRR5-ARHGAP8B1AHC4 643 aa5.97□□□□□ -1.45
VPS50-219ENST00000495039 DIRC3C9JPN6 131 aa5.97□□□□□ -1.45
VPS50-219ENST00000495039 CBX4O00257 560 aa5.97□□□□□ -1.45
VPS50-219ENST00000495039 NDUFA10O95299 355 aa5.97□□□□□ -1.45
VPS50-219ENST00000495039 HKR1P10072 659 aa5.97□□□□□ -1.45
VPS50-219ENST00000495039 HSP90B1P14625 803 aaKnown RBP5.97□□□□□ -1.45
VPS50-219ENST00000495039 FLT3P36888 993 aa5.97□□□□□ -1.45
VPS50-219ENST00000495039 BMPR1AP36894 532 aa5.97□□□□□ -1.45
VPS50-219ENST00000495039 DUSP2Q05923 314 aa5.97□□□□□ -1.45
VPS50-219ENST00000495039 CD69Q07108 199 aa5.97□□□□□ -1.45
VPS50-219ENST00000495039 ZNF460Q14592 562 aa5.97□□□□□ -1.45
VPS50-219ENST00000495039 BEAN1Q3B7T3 259 aa5.97□□□□□ -1.45
VPS50-219ENST00000495039 FNDC3BQ53EP0 1204 aaKnown RBP5.97□□□□□ -1.45
VPS50-219ENST00000495039 FBXO42Q6P3S6 717 aa5.97□□□□□ -1.45
VPS50-219ENST00000495039 GLCCI1Q86VQ1 547 aa5.97□□□□□ -1.45
VPS50-219ENST00000495039 LINC00476Q8WZB0 136 aa5.97□□□□□ -1.45
VPS50-219ENST00000495039 RTF1Q92541 710 aaKnown RBP5.97□□□□□ -1.45
VPS50-219ENST00000495039 MKL1Q969V6 931 aa5.97□□□□□ -1.45
VPS50-219ENST00000495039 PRDM13Q9H4Q3 707 aa5.97□□□□□ -1.45
VPS50-219ENST00000495039 PODXL2Q9NZ53 605 aa5.97□□□□□ -1.45
VPS50-219ENST00000495039 PCDHB6Q9Y5E3 794 aa5.97□□□□□ -1.45
VPS50-219ENST00000495039 EPN1Q9Y6I3 576 aaPredicted RBP5.97□□□□□ -1.45
VPS50-219ENST00000495039 MYPNQ86TC9 1320 aa5.97□□□□□ -1.45
VPS50-219ENST00000495039 DNAJC8O75937 253 aaPredicted RBP5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms