RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 ACTN1P12814 892 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 RAD23BP54727 409 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 ZNF211Q13398 564 aaPredicted RBP17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 MCPH1Q8NEM0 835 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 CAPN6Q9Y6Q1 641 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 DPEP1P16444 411 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 SMARCA1P28370 1054 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 COG7P83436 770 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 SEMA3FQ13275 785 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 BAATQ14032 418 aaPredicted RBP17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 HAUS6Q7Z4H7 955 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 CTAGE3PQ8IX95 158 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 GRK7Q8WTQ7 553 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 BFSP1Q12934 665 aa17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 SGO2Q562F6 1265 aa17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 XPO6Q96QU8 1125 aaKnown RBP17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 SLC5A4Q9NY91 659 aa17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 SKAP2O75563 359 aaPredicted RBP17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 OSBPP22059 807 aa17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 VAMP7P51809 220 aa17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 SEPT6Q14141 434 aa17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 DEFB132Q7Z7B7 95 aa17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 SREK1Q8WXA9 508 aaKnown RBP17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 OTUD5Q96G74 571 aa17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 AGBL1Q96MI9 1066 aa17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 INTS13Q9NVM9 706 aa17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 SEL1LQ9UBV2 794 aa17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 PEAK1Q9H792 1746 aa17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 PPP1R12AO14974 1030 aaPredicted RBP17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 MYBP10242 640 aa17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 CHN1P15882 459 aa17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 AARSP49588 968 aaKnown RBP eCLIP17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 PSMC5P62195 406 aa17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 ZC2HC1CQ53FD0 456 aaPredicted RBP17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 PDXDC1Q6P996 788 aa17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 HDAC7Q8WUI4 952 aa17.44■□□□□ 0.38
CCDC88B-209ENST00000494080 SAMD7Q7Z3H4 446 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 TCHHQ07283 1943 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 CCT8L1PA6NM43 557 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 MAPK13O15264 365 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 RPS6KA5O75582 802 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 FXR2P51116 673 aaKnown RBP eCLIP17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 RCN2Q14257 317 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 KRT81Q14533 505 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 SLC15A2Q16348 729 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 SRRM1Q8IYB3 904 aaKnown RBP17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 ELOA2Q8IYF1 753 aaPredicted RBP17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 RNF168Q8IYW5 571 aaPredicted RBP17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 KIF2BQ8N4N8 673 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 DAGLBQ8NCG7 672 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 MDM1Q8TC05 714 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 ATP6V0A4Q9HBG4 840 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 NFAT5O94916 1531 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 SYNJ2BP-COX16A0A087WUM0 186 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 WDR91A4D1P6 747 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 SYF2O95926 243 aaKnown RBP17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 IL1R1P14778 569 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 HSPA6P17066 643 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 CA4P22748 312 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 ANKRD36BP1Q96IX9 119 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 COX16Q9P0S2 106 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 EMSYQ7Z589 1322 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 PDXKO00764 312 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 DDR1Q08345 913 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 BYSLQ13895 437 aaKnown RBP17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 PRMT1Q99873 361 aaKnown RBP17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 ANAPC5Q9UJX4 755 aa17.43■□□□□ 0.38
CCDC88B-209ENST00000494080 TTI1O43156 1089 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 HERVK_113P62684 666 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 GRB10Q13322 594 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 SLC10A4Q96EP9 437 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 DDX27Q96GQ7 796 aaKnown RBP17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 SH3BGRP55822 239 aaPredicted RBP17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 STYK1Q6J9G0 422 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 SLC30A9Q6PML9 568 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 CATSPER3Q86XQ3 398 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 PASD1Q8IV76 773 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 CALR3Q96L12 384 aaKnown RBP17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 ZDHHC15Q96MV8 337 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 DDX4Q9NQI0 724 aaKnown RBP17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 PPP1R9AQ9ULJ8 1098 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 PCDHA10Q9Y5I2 948 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 RASSF10A6NK89 507 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 CLDN3O15551 220 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 TAL1P17542 331 aaPredicted RBP17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 ARL1P40616 181 aaPredicted RBP17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 PLCB4Q15147 1175 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 CDKAL1Q5VV42 579 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 LRIG3Q6UXM1 1119 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 TRPM8Q7Z2W7 1104 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 C7orf31Q8N865 590 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 NUDCD1Q96RS6 583 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 MAP3K7O43318 606 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 BRAFP15056 766 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 DYNLT1P63172 113 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 PALM2Q8IXS6 379 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 NLRP7Q8WX94 980 aa17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 INTS2Q9H0H0 1204 aaKnown RBP17.42■□□□□ 0.38
CCDC88B-209ENST00000494080 CYTH3O43739 400 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms