RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 TOM1L1O75674 476 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 PGK1P00558 417 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 SERPINC1P01008 464 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 EPB41P11171 864 aaKnown RBP10.57□□□□□ -0.72
USP54-214ENST00000492357 CYP2C9P11712 490 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 GPC3P51654 580 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 ZNF75DP51815 510 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 PMS1P54277 932 aaKnown RBP10.57□□□□□ -0.72
USP54-214ENST00000492357 STX17P56962 302 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 RBL2Q08999 1139 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 NCBP1Q09161 790 aaKnown RBP10.57□□□□□ -0.72
USP54-214ENST00000492357 MAN2A1Q16706 1144 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 ZC2HC1CQ53FD0 456 aaPredicted RBP10.57□□□□□ -0.72
USP54-214ENST00000492357 C1orf53Q5VUE5 145 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 INTS8Q75QN2 995 aaKnown RBP10.57□□□□□ -0.72
USP54-214ENST00000492357 MAEAQ7L5Y9 396 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 SERINC5Q86VE9 423 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 IRF2BP1Q8IU81 584 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 RHPN2Q8IUC4 686 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 TRIM59Q8IWR1 403 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 XXYLT1Q8NBI6 393 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 RNF149Q8NC42 400 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 GLIS3Q8NEA6 775 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 LENG1Q96BZ8 264 aaPredicted RBP10.57□□□□□ -0.72
USP54-214ENST00000492357 CCDC51Q96ER9 411 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 CNOT6LQ96LI5 555 aaKnown RBP10.57□□□□□ -0.72
USP54-214ENST00000492357 FBXL18Q96ME1 805 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 SH2D3AQ9BRG2 576 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 FGFBP2Q9BYJ0 223 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 GCOM2Q9BZD3 368 aaPredicted RBP10.57□□□□□ -0.72
USP54-214ENST00000492357 SAMSN1Q9NSI8 373 aaKnown RBP10.57□□□□□ -0.72
USP54-214ENST00000492357 SETD4Q9NVD3 440 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 IMPACTQ9P2X3 320 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 HDAC6Q9UBN7 1215 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 ARMCX3Q9UH62 379 aaPredicted RBP10.57□□□□□ -0.72
USP54-214ENST00000492357 TNFSF13BQ9Y275 285 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.57□□□□□ -0.72
USP54-214ENST00000492357 ITIH6Q6UXX5 1313 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 ADGRA3Q8IWK6 1321 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 CNTNAP2Q9UHC6 1331 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 A0A0U1RQG5 324 aaPredicted RBP10.56□□□□□ -0.72
USP54-214ENST00000492357 GTPBP10A4D1E9 387 aaKnown RBP10.56□□□□□ -0.72
USP54-214ENST00000492357 MYADML2A6NDP7 307 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 M0QZ92 97 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 P4HA2O15460 535 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 ADCY5O95622 1261 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 GJB1P08034 283 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 LIG4P49917 911 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 CRYBB1P53674 252 aaPredicted RBP10.56□□□□□ -0.72
USP54-214ENST00000492357 UBASH3AP57075 661 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 IGBP1P78318 339 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 PTK7Q13308 1070 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 TRIM14Q14142 442 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 SURF1Q15526 300 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 NBPF20Q3BBV1 942 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 ARMCX5Q6P1M9 558 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 CXCL17Q6UXB2 119 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 TSHZ1Q6ZSZ6 1077 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 APTXQ7Z2E3 356 aaKnown RBP10.56□□□□□ -0.72
USP54-214ENST00000492357 TRMT1LQ7Z2T5 733 aaKnown RBP10.56□□□□□ -0.72
USP54-214ENST00000492357 NELFCDQ8IXH7 590 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 LRRC71Q8N4P6 559 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 CCDC155Q8N6L0 562 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 USP38Q8NB14 1042 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 TRAPPC12Q8WVT3 735 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 TSPAN18Q96SJ8 248 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 TUBGCP2Q9BSJ2 902 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 CRISPLD2Q9H0B8 497 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 IFT122Q9HBG6 1241 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 PRDM10Q9NQV6 1147 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 AKT3Q9Y243 479 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 EVPLQ92817 2033 aa10.56□□□□□ -0.72
USP54-214ENST00000492357 LGALS16A8MUM7 142 aa10.55□□□□□ -0.72
USP54-214ENST00000492357 N4BP1O75113 896 aaKnown RBP10.55□□□□□ -0.72
USP54-214ENST00000492357 PARNO95453 639 aaKnown RBP10.55□□□□□ -0.72
USP54-214ENST00000492357 PRKCBP05771 671 aa10.55□□□□□ -0.72
USP54-214ENST00000492357 CCL5P13501 91 aa10.55□□□□□ -0.72
USP54-214ENST00000492357 ATP1A3P13637 1013 aa10.55□□□□□ -0.72
USP54-214ENST00000492357 KRT13P13646 458 aa10.55□□□□□ -0.72
USP54-214ENST00000492357 PROZP22891 400 aa10.55□□□□□ -0.72
USP54-214ENST00000492357 SFPQP23246 707 aaKnown RBP eCLIP10.55□□□□□ -0.72
USP54-214ENST00000492357 GTF2H1P32780 548 aa10.55□□□□□ -0.72
USP54-214ENST00000492357 MTIF2P46199 727 aaKnown RBP10.55□□□□□ -0.72
USP54-214ENST00000492357 CLCN3P51790 818 aa10.55□□□□□ -0.72
USP54-214ENST00000492357 COPB1P53618 953 aaKnown RBP10.55□□□□□ -0.72
USP54-214ENST00000492357 AP3M2P53677 418 aa10.55□□□□□ -0.72
USP54-214ENST00000492357 MBTD1Q05BQ5 628 aa10.55□□□□□ -0.72
USP54-214ENST00000492357 ITGA7Q13683 1181 aa10.55□□□□□ -0.72
USP54-214ENST00000492357 NR1I3Q14994 352 aa10.55□□□□□ -0.72
USP54-214ENST00000492357 KRT31Q15323 416 aa10.55□□□□□ -0.72
USP54-214ENST00000492357 CCDC40Q4G0X9 1142 aa10.55□□□□□ -0.72
USP54-214ENST00000492357 HS1BP3Q53T59 392 aa10.55□□□□□ -0.72
USP54-214ENST00000492357 FIGNQ5HY92 759 aa10.55□□□□□ -0.72
USP54-214ENST00000492357 FKBP15Q5T1M5 1219 aa10.55□□□□□ -0.72
USP54-214ENST00000492357 TAS1R3Q7RTX0 852 aa10.55□□□□□ -0.72
USP54-214ENST00000492357 GPD1LQ8N335 351 aa10.55□□□□□ -0.72
USP54-214ENST00000492357 TMC2Q8TDI7 906 aa10.55□□□□□ -0.72
USP54-214ENST00000492357 ZNF333Q96JL9 665 aa10.55□□□□□ -0.72
USP54-214ENST00000492357 EDEM3Q9BZQ6 932 aa10.55□□□□□ -0.72
USP54-214ENST00000492357 ADAMTS10Q9H324 1103 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms