RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 PGBD4Q96DM1 585 aa27.32■■□□□ 1.96
UPF3A-209ENST00000492270 ZNF558Q96NG5 402 aa27.32■■□□□ 1.96
UPF3A-209ENST00000492270 PLIN2Q99541 437 aa27.32■■□□□ 1.96
UPF3A-209ENST00000492270 TBC1D13Q9NVG8 400 aa27.32■■□□□ 1.96
UPF3A-209ENST00000492270 DNM3Q9UQ16 869 aa27.32■■□□□ 1.96
UPF3A-209ENST00000492270 BMP1P13497 986 aa27.31■■□□□ 1.96
UPF3A-209ENST00000492270 KCNA5P22460 613 aa27.31■■□□□ 1.96
UPF3A-209ENST00000492270 AFF1P51825 1210 aaKnown RBP27.31■■□□□ 1.96
UPF3A-209ENST00000492270 GRIN1Q05586 938 aa27.31■■□□□ 1.96
UPF3A-209ENST00000492270 CSPP1Q1MSJ5 1256 aa27.31■■□□□ 1.96
UPF3A-209ENST00000492270 NOMO2Q5JPE7 1267 aa27.31■■□□□ 1.96
UPF3A-209ENST00000492270 FAM173BQ6P4H8 233 aa27.31■■□□□ 1.96
UPF3A-209ENST00000492270 SYMPKQ92797 1274 aaKnown RBP27.31■■□□□ 1.96
UPF3A-209ENST00000492270 SNX21Q969T3 373 aa27.31■■□□□ 1.96
UPF3A-209ENST00000492270 KIFC3Q9BVG8 833 aa27.31■■□□□ 1.96
UPF3A-209ENST00000492270 RUSC1Q9BVN2 902 aa27.31■■□□□ 1.96
UPF3A-209ENST00000492270 CSRNP2Q9H175 543 aa27.31■■□□□ 1.96
UPF3A-209ENST00000492270 RSAD1Q9HA92 442 aa27.31■■□□□ 1.96
UPF3A-209ENST00000492270 HES2Q9Y543 173 aa27.31■■□□□ 1.96
UPF3A-209ENST00000492270 IPPQ9Y573 584 aa27.31■■□□□ 1.96
UPF3A-209ENST00000492270 TTLL13PA6NNM8 815 aa27.3■■□□□ 1.96
UPF3A-209ENST00000492270 NT5C1B-RDH14C9J2C7 533 aa27.3■■□□□ 1.96
UPF3A-209ENST00000492270 NCLP19338 710 aaKnown RBP27.3■■□□□ 1.96
UPF3A-209ENST00000492270 ERVFC1P60507 584 aa27.3■■□□□ 1.96
UPF3A-209ENST00000492270 COL19A1Q14993 1142 aa27.3■■□□□ 1.96
UPF3A-209ENST00000492270 HYIQ5T013 277 aa27.3■■□□□ 1.96
UPF3A-209ENST00000492270 EP400NLQ6ZTU2 488 aa27.3■■□□□ 1.96
UPF3A-209ENST00000492270 ZBTB8OSQ8IWT0 167 aa27.3■■□□□ 1.96
UPF3A-209ENST00000492270 ADAMTS19Q8TE59 1207 aa27.3■■□□□ 1.96
UPF3A-209ENST00000492270 CCDC51Q96ER9 411 aa27.3■■□□□ 1.96
UPF3A-209ENST00000492270 RNF39Q9H2S5 420 aa27.3■■□□□ 1.96
UPF3A-209ENST00000492270 IGFLR1Q9H665 355 aa27.3■■□□□ 1.96
UPF3A-209ENST00000492270 TLR9Q9NR96 1032 aa27.3■■□□□ 1.96
UPF3A-209ENST00000492270 TTC28Q96AY4 2481 aa27.3■■□□□ 1.96
UPF3A-209ENST00000492270 B4GALT3O60512 393 aa27.29■■□□□ 1.96
UPF3A-209ENST00000492270 ZC3H11AO75152 810 aaKnown RBP eCLIP27.29■■□□□ 1.96
UPF3A-209ENST00000492270 EDN1P05305 212 aa27.29■■□□□ 1.96
UPF3A-209ENST00000492270 NAMPTP43490 491 aa27.29■■□□□ 1.96
UPF3A-209ENST00000492270 BCAR1P56945 870 aa27.29■■□□□ 1.96
UPF3A-209ENST00000492270 UBE3AQ05086 875 aa27.29■■□□□ 1.96
UPF3A-209ENST00000492270 NCBP1Q09161 790 aaKnown RBP27.29■■□□□ 1.96
UPF3A-209ENST00000492270 PPP4R3CPQ6ZMV5 832 aa27.29■■□□□ 1.96
UPF3A-209ENST00000492270 SLC39A11Q8N1S5 342 aa27.29■■□□□ 1.96
UPF3A-209ENST00000492270 PABPC5Q96DU9 382 aaKnown RBP27.29■■□□□ 1.96
UPF3A-209ENST00000492270 GBP3Q9H0R5 595 aa27.29■■□□□ 1.96
UPF3A-209ENST00000492270 FZD8Q9H461 694 aa27.29■■□□□ 1.96
UPF3A-209ENST00000492270 NRDE2Q9H7Z3 1164 aa27.29■■□□□ 1.96
UPF3A-209ENST00000492270 PRMT7Q9NVM4 692 aaPredicted RBP27.29■■□□□ 1.96
UPF3A-209ENST00000492270 CLDND1Q9NY35 253 aa27.29■■□□□ 1.96
UPF3A-209ENST00000492270 MTMR6Q9Y217 621 aa27.29■■□□□ 1.96
UPF3A-209ENST00000492270 USP20Q9Y2K6 914 aa27.29■■□□□ 1.96
UPF3A-209ENST00000492270 CLIC4Q9Y696 253 aa27.29■■□□□ 1.96
UPF3A-209ENST00000492270 CNTNAP2Q9UHC6 1331 aa27.28■■□□□ 1.96
UPF3A-209ENST00000492270 NPTXRO95502 500 aa27.28■■□□□ 1.96
UPF3A-209ENST00000492270 ITGA4P13612 1032 aa27.28■■□□□ 1.96
UPF3A-209ENST00000492270 PLCB3Q01970 1234 aa27.28■■□□□ 1.96
UPF3A-209ENST00000492270 RINT1Q6NUQ1 792 aa27.28■■□□□ 1.96
UPF3A-209ENST00000492270 TMEM173Q86WV6 379 aaPredicted RBP27.28■■□□□ 1.96
UPF3A-209ENST00000492270 DAW1Q8N136 415 aa27.28■■□□□ 1.96
UPF3A-209ENST00000492270 DEPTORQ8TB45 409 aa27.28■■□□□ 1.96
UPF3A-209ENST00000492270 MRPS27Q92552 414 aaKnown RBP27.28■■□□□ 1.96
UPF3A-209ENST00000492270 KIFAP3Q92845 792 aa27.28■■□□□ 1.96
UPF3A-209ENST00000492270 NECAB3Q96P71 396 aaPredicted RBP27.28■■□□□ 1.96
UPF3A-209ENST00000492270 APOL6Q9BWW8 343 aa27.28■■□□□ 1.96
UPF3A-209ENST00000492270 CCDC113Q9H0I3 377 aa27.28■■□□□ 1.96
UPF3A-209ENST00000492270 NXF3Q9H4D5 531 aaKnown RBP27.28■■□□□ 1.96
UPF3A-209ENST00000492270 SPG21Q9NZD8 308 aa27.28■■□□□ 1.96
UPF3A-209ENST00000492270 DNAJB4Q9UDY4 337 aa27.28■■□□□ 1.96
UPF3A-209ENST00000492270 H3BQ06 376 aaPredicted RBP27.27■■□□□ 1.96
UPF3A-209ENST00000492270 LINC01565O15544 149 aa27.27■■□□□ 1.96
UPF3A-209ENST00000492270 HIP1RO75146 1068 aa27.27■■□□□ 1.96
UPF3A-209ENST00000492270 LIG1P18858 919 aa27.27■■□□□ 1.96
UPF3A-209ENST00000492270 PPM1AP35813 382 aa27.27■■□□□ 1.96
UPF3A-209ENST00000492270 PPP2R5AQ15172 486 aa27.27■■□□□ 1.96
UPF3A-209ENST00000492270 FAM187BQ17R55 369 aa27.27■■□□□ 1.96
UPF3A-209ENST00000492270 TMEM119Q4V9L6 283 aa27.27■■□□□ 1.96
UPF3A-209ENST00000492270 RBM23Q86U06 439 aaKnown RBP27.27■■□□□ 1.96
UPF3A-209ENST00000492270 CABP7Q86V35 215 aa27.27■■□□□ 1.96
UPF3A-209ENST00000492270 ZNF280BQ86YH2 543 aa27.27■■□□□ 1.96
UPF3A-209ENST00000492270 MICAL1Q8TDZ2 1067 aa27.27■■□□□ 1.96
UPF3A-209ENST00000492270 PRIMPOLQ96LW4 560 aa27.27■■□□□ 1.96
UPF3A-209ENST00000492270 C2orf40Q9H1Z8 148 aa27.27■■□□□ 1.96
UPF3A-209ENST00000492270 TRIP11Q15643 1979 aa27.27■■□□□ 1.96
UPF3A-209ENST00000492270 A0A1B0GUA9 196 aa27.26■■□□□ 1.95
UPF3A-209ENST00000492270 FSCN2O14926 492 aa27.26■■□□□ 1.95
UPF3A-209ENST00000492270 BMP15O95972 392 aa27.26■■□□□ 1.95
UPF3A-209ENST00000492270 SSBP05455 408 aaKnown RBP eCLIP27.26■■□□□ 1.95
UPF3A-209ENST00000492270 PRKCBP05771 671 aa27.26■■□□□ 1.95
UPF3A-209ENST00000492270 LTBRP36941 435 aa27.26■■□□□ 1.95
UPF3A-209ENST00000492270 RNASELQ05823 741 aaKnown RBP27.26■■□□□ 1.95
UPF3A-209ENST00000492270 MAPK7Q13164 816 aa27.26■■□□□ 1.95
UPF3A-209ENST00000492270 SLC27A1Q6PCB7 646 aa27.26■■□□□ 1.95
UPF3A-209ENST00000492270 C1orf186Q6ZWK4 172 aa27.26■■□□□ 1.95
UPF3A-209ENST00000492270 CNNM3Q8NE01 707 aa27.26■■□□□ 1.95
UPF3A-209ENST00000492270 URGCPQ8TCY9 931 aa27.26■■□□□ 1.95
UPF3A-209ENST00000492270 LRRC15Q8TF66 581 aa27.26■■□□□ 1.95
UPF3A-209ENST00000492270 RSPH1Q8WYR4 309 aa27.26■■□□□ 1.95
UPF3A-209ENST00000492270 CDK5RAP3Q96JB5 506 aa27.26■■□□□ 1.95
UPF3A-209ENST00000492270 IFT74Q96LB3 600 aa27.26■■□□□ 1.95
UPF3A-209ENST00000492270 TRIM6Q9C030 488 aaPredicted RBP27.26■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms