RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 NOL10Q9BSC4 688 aaKnown RBP6.33□□□□□ -1.4
SCN1A-206ENST00000491429 NDC1Q9BTX1 674 aa6.33□□□□□ -1.4
SCN1A-206ENST00000491429 POFUT1Q9H488 388 aa6.33□□□□□ -1.4
SCN1A-206ENST00000491429 TRPM5Q9NZQ8 1165 aa6.33□□□□□ -1.4
SCN1A-206ENST00000491429 CCDC163A0A0D9SF12 145 aa6.32□□□□□ -1.4
SCN1A-206ENST00000491429 TMEM200CA6NKL6 621 aa6.32□□□□□ -1.4
SCN1A-206ENST00000491429 NCR1O76036 304 aa6.32□□□□□ -1.4
SCN1A-206ENST00000491429 ALDH1A2O94788 518 aa6.32□□□□□ -1.4
SCN1A-206ENST00000491429 ATP2B1P20020 1258 aa6.32□□□□□ -1.4
SCN1A-206ENST00000491429 USP14P54578 494 aa6.32□□□□□ -1.4
SCN1A-206ENST00000491429 KRTAP10-11P60412 298 aa6.32□□□□□ -1.4
SCN1A-206ENST00000491429 MAN2A1Q16706 1144 aa6.32□□□□□ -1.4
SCN1A-206ENST00000491429 NAALADL2Q58DX5 795 aa6.32□□□□□ -1.4
SCN1A-206ENST00000491429 KIAA1841Q6NSI8 718 aa6.32□□□□□ -1.4
SCN1A-206ENST00000491429 C7orf31Q8N865 590 aa6.32□□□□□ -1.4
SCN1A-206ENST00000491429 OR5M3Q8NGP4 307 aa6.32□□□□□ -1.4
SCN1A-206ENST00000491429 CLUHP3Q96NS8 147 aa6.32□□□□□ -1.4
SCN1A-206ENST00000491429 PDCD2LQ9BRP1 358 aa6.32□□□□□ -1.4
SCN1A-206ENST00000491429 TANGO6Q9C0B7 1094 aa6.32□□□□□ -1.4
SCN1A-206ENST00000491429 PTCH2Q9Y6C5 1203 aa6.32□□□□□ -1.4
SCN1A-206ENST00000491429 NRP1O14786 923 aa6.31□□□□□ -1.4
SCN1A-206ENST00000491429 IGFALSP35858 605 aa6.31□□□□□ -1.4
SCN1A-206ENST00000491429 ZNF460Q14592 562 aa6.31□□□□□ -1.4
SCN1A-206ENST00000491429 METTL24Q5JXM2 366 aa6.31□□□□□ -1.4
SCN1A-206ENST00000491429 CCDC62Q6P9F0 684 aa6.31□□□□□ -1.4
SCN1A-206ENST00000491429 FAM83AQ86UY5 434 aa6.31□□□□□ -1.4
SCN1A-206ENST00000491429 PHYKPLQ8IUZ5 450 aa6.31□□□□□ -1.4
SCN1A-206ENST00000491429 GLB1L3Q8NCI6 653 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-206ENST00000491429 SUPT20HQ8NEM7 779 aa6.31□□□□□ -1.4
SCN1A-206ENST00000491429 RTF1Q92541 710 aaKnown RBP6.31□□□□□ -1.4
SCN1A-206ENST00000491429 AKIP1Q9NQ31 210 aa6.31□□□□□ -1.4
SCN1A-206ENST00000491429 SYBUQ9NX95 663 aa6.31□□□□□ -1.4
SCN1A-206ENST00000491429 COX11Q9Y6N1 276 aa6.31□□□□□ -1.4
SCN1A-206ENST00000491429 B4E1Z4 1266 aa6.3□□□□□ -1.4
SCN1A-206ENST00000491429 LEFTY2O00292 366 aa6.3□□□□□ -1.4
SCN1A-206ENST00000491429 TYRP1P17643 537 aa6.3□□□□□ -1.4
SCN1A-206ENST00000491429 GTF2F1P35269 517 aaKnown RBP eCLIP6.3□□□□□ -1.4
SCN1A-206ENST00000491429 RANGAP1P46060 587 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-206ENST00000491429 CD69Q07108 199 aa6.3□□□□□ -1.4
SCN1A-206ENST00000491429 ADCY1Q08828 1119 aa6.3□□□□□ -1.4
SCN1A-206ENST00000491429 MRPL49Q13405 166 aaKnown RBP6.3□□□□□ -1.4
SCN1A-206ENST00000491429 CREB3L3Q68CJ9 461 aa6.3□□□□□ -1.4
SCN1A-206ENST00000491429 IQSEC1Q6DN90 963 aa6.3□□□□□ -1.4
SCN1A-206ENST00000491429 TIGD7Q6NT04 549 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-206ENST00000491429 GDF7Q7Z4P5 450 aa6.3□□□□□ -1.4
SCN1A-206ENST00000491429 XYLT1Q86Y38 959 aa6.3□□□□□ -1.4
SCN1A-206ENST00000491429 ARHGEF19Q8IW93 802 aa6.3□□□□□ -1.4
SCN1A-206ENST00000491429 CMTR2Q8IYT2 770 aaKnown RBP6.3□□□□□ -1.4
SCN1A-206ENST00000491429 LCORLQ8N3X6 602 aa6.3□□□□□ -1.4
SCN1A-206ENST00000491429 PPP1R14CQ8TAE6 165 aa6.3□□□□□ -1.4
SCN1A-206ENST00000491429 TEX101Q9BY14 249 aa6.3□□□□□ -1.4
SCN1A-206ENST00000491429 CABP5Q9NP86 173 aa6.3□□□□□ -1.4
SCN1A-206ENST00000491429 CHST2Q9Y4C5 530 aa6.3□□□□□ -1.4
SCN1A-206ENST00000491429 EPN1Q9Y6I3 576 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-206ENST00000491429 SPATA31A6Q5VVP1 1343 aa6.29□□□□□ -1.4
SCN1A-206ENST00000491429 PCDH8O95206 1070 aa6.29□□□□□ -1.4
SCN1A-206ENST00000491429 NDUFA10O95299 355 aa6.29□□□□□ -1.4
SCN1A-206ENST00000491429 FBXO42Q6P3S6 717 aa6.29□□□□□ -1.4
SCN1A-206ENST00000491429 UNC5BQ8IZJ1 945 aa6.29□□□□□ -1.4
SCN1A-206ENST00000491429 IL17RAQ96F46 866 aa6.29□□□□□ -1.4
SCN1A-206ENST00000491429 HIST1H2AHQ96KK5 128 aa6.29□□□□□ -1.4
SCN1A-206ENST00000491429 SRPK1Q96SB4 655 aaKnown RBP6.29□□□□□ -1.4
SCN1A-206ENST00000491429 HIST1H2AJQ99878 128 aa6.29□□□□□ -1.4
SCN1A-206ENST00000491429 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.29□□□□□ -1.4
SCN1A-206ENST00000491429 B4GALT6Q9UBX8 382 aa6.29□□□□□ -1.4
SCN1A-206ENST00000491429 RNASET2O00584 256 aaKnown RBP6.28□□□□□ -1.4
SCN1A-206ENST00000491429 PLD2O14939 933 aa6.28□□□□□ -1.4
SCN1A-206ENST00000491429 MAFGO15525 162 aa6.28□□□□□ -1.4
SCN1A-206ENST00000491429 DNAJC8O75937 253 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-206ENST00000491429 PTH2RP49190 550 aa6.28□□□□□ -1.4
SCN1A-206ENST00000491429 BEAN1Q3B7T3 259 aa6.28□□□□□ -1.4
SCN1A-206ENST00000491429 C2orf27AQ580R0 203 aa6.28□□□□□ -1.4
SCN1A-206ENST00000491429 PIK3R6Q5UE93 754 aa6.28□□□□□ -1.4
SCN1A-206ENST00000491429 DOK3Q7L591 496 aa6.28□□□□□ -1.4
SCN1A-206ENST00000491429 HIRIP3Q9BW71 556 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-206ENST00000491429 TOMM22Q9NS69 142 aa6.28□□□□□ -1.4
SCN1A-206ENST00000491429 INTS7Q9NVH2 962 aaKnown RBP6.28□□□□□ -1.4
SCN1A-206ENST00000491429 DKK2Q9UBU2 259 aa6.28□□□□□ -1.4
SCN1A-206ENST00000491429 HDAC5Q9UQL6 1122 aa6.28□□□□□ -1.4
SCN1A-206ENST00000491429 INO80B-WBP1J3KQ70 363 aa6.27□□□□□ -1.41
SCN1A-206ENST00000491429 CBX4O00257 560 aa6.27□□□□□ -1.41
SCN1A-206ENST00000491429 ZNF185O15231 689 aa6.27□□□□□ -1.41
SCN1A-206ENST00000491429 OPA1O60313 960 aa6.27□□□□□ -1.41
SCN1A-206ENST00000491429 LY86O95711 162 aa6.27□□□□□ -1.41
SCN1A-206ENST00000491429 ASLP04424 464 aa6.27□□□□□ -1.41
SCN1A-206ENST00000491429 SEC24CP53992 1094 aa6.27□□□□□ -1.41
SCN1A-206ENST00000491429 WNT3AP56704 352 aa6.27□□□□□ -1.41
SCN1A-206ENST00000491429 RNASE9P60153 205 aaKnown RBP6.27□□□□□ -1.41
SCN1A-206ENST00000491429 FOXI1Q12951 378 aa6.27□□□□□ -1.41
SCN1A-206ENST00000491429 SYT12Q8IV01 421 aa6.27□□□□□ -1.41
SCN1A-206ENST00000491429 LINC00476Q8WZB0 136 aa6.27□□□□□ -1.41
SCN1A-206ENST00000491429 DCLRE1CQ96SD1 692 aaKnown RBP6.27□□□□□ -1.41
SCN1A-206ENST00000491429 INO80BQ9C086 356 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-206ENST00000491429 RSAD1Q9HA92 442 aa6.27□□□□□ -1.41
SCN1A-206ENST00000491429 SPO11Q9Y5K1 396 aa6.27□□□□□ -1.41
SCN1A-206ENST00000491429 UNC119BA6NIH7 251 aa6.26□□□□□ -1.41
SCN1A-206ENST00000491429 ELL2O00472 640 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-206ENST00000491429 PLA2G5P39877 138 aa6.26□□□□□ -1.41
SCN1A-206ENST00000491429 PRR16Q569H4 304 aa6.26□□□□□ -1.41
SCN1A-206ENST00000491429 GPRIN1Q7Z2K8 1008 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms