RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 PCDHB12Q9Y5F1 795 aa20.07■□□□□ 0.8
COL9A3-214ENST00000490398 STK24Q9Y6E0 443 aa20.07■□□□□ 0.8
COL9A3-214ENST00000490398 CUL9Q8IWT3 2517 aa20.07■□□□□ 0.8
COL9A3-214ENST00000490398 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.06■□□□□ 0.8
COL9A3-214ENST00000490398 NT5C1B-RDH14C9J2C7 533 aa20.06■□□□□ 0.8
COL9A3-214ENST00000490398 LAG3P18627 525 aa20.06■□□□□ 0.8
COL9A3-214ENST00000490398 RAB27AP51159 221 aa20.06■□□□□ 0.8
COL9A3-214ENST00000490398 MRPS5P82675 430 aaKnown RBP20.06■□□□□ 0.8
COL9A3-214ENST00000490398 CEBPZQ03701 1054 aaKnown RBP20.06■□□□□ 0.8
COL9A3-214ENST00000490398 MAPK7Q13164 816 aa20.06■□□□□ 0.8
COL9A3-214ENST00000490398 TIGD5Q53EQ6 642 aa20.06■□□□□ 0.8
COL9A3-214ENST00000490398 TJAP1Q5JTD0 557 aa20.06■□□□□ 0.8
COL9A3-214ENST00000490398 C1orf186Q6ZWK4 172 aa20.06■□□□□ 0.8
COL9A3-214ENST00000490398 USP49Q70CQ1 688 aa20.06■□□□□ 0.8
COL9A3-214ENST00000490398 CABP7Q86V35 215 aa20.06■□□□□ 0.8
COL9A3-214ENST00000490398 TMEM173Q86WV6 379 aaPredicted RBP20.06■□□□□ 0.8
COL9A3-214ENST00000490398 ZNF280BQ86YH2 543 aa20.06■□□□□ 0.8
COL9A3-214ENST00000490398 THNSL1Q8IYQ7 743 aa20.06■□□□□ 0.8
COL9A3-214ENST00000490398 CCDC113Q9H0I3 377 aa20.06■□□□□ 0.8
COL9A3-214ENST00000490398 CSRNP2Q9H175 543 aa20.06■□□□□ 0.8
COL9A3-214ENST00000490398 UBE2ZQ9H832 354 aaPredicted RBP20.06■□□□□ 0.8
COL9A3-214ENST00000490398 TBC1D13Q9NVG8 400 aa20.06■□□□□ 0.8
COL9A3-214ENST00000490398 PLXNA4Q9HCM2 1894 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 NPHP3-ACAD11A0A0J9YXS1 232 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 SFI1A8K8P3 1242 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 LINC01565O15544 149 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 STX6O43752 255 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 HIP1RO75146 1068 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 SKIP12755 728 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 BMP1P13497 986 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 LIG1P18858 919 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 NCLP19338 710 aaKnown RBP20.05■□□□□ 0.8
COL9A3-214ENST00000490398 MARCKSP29966 332 aaPredicted RBP20.05■□□□□ 0.8
COL9A3-214ENST00000490398 NAMPTP43490 491 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 BCAR1P56945 870 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 RAD51AP2Q09MP3 1159 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 NOMO2Q5JPE7 1267 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 SPECC1Q5M775 1068 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 NOTUMQ6P988 496 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 PPP4R3CPQ6ZMV5 832 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 SPRYD3Q8NCJ5 442 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 BCL7CQ8WUZ0 217 aaPredicted RBP20.05■□□□□ 0.8
COL9A3-214ENST00000490398 USP28Q96RU2 1077 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 NXF3Q9H4D5 531 aaKnown RBP20.05■□□□□ 0.8
COL9A3-214ENST00000490398 NRDE2Q9H7Z3 1164 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 AAASQ9NRG9 546 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 MIOSQ9NXC5 875 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 DNAJB4Q9UDY4 337 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 COG5Q9UP83 839 aa20.05■□□□□ 0.8
COL9A3-214ENST00000490398 BRWD1Q9NSI6 2320 aa20.04■□□□□ 0.8
COL9A3-214ENST00000490398 A0A1B0GUA9 196 aa20.04■□□□□ 0.8
COL9A3-214ENST00000490398 DDHD2O94830 711 aa20.04■□□□□ 0.8
COL9A3-214ENST00000490398 NPTXRO95502 500 aa20.04■□□□□ 0.8
COL9A3-214ENST00000490398 SSBP05455 408 aaKnown RBP eCLIP20.04■□□□□ 0.8
COL9A3-214ENST00000490398 AXLP30530 894 aa20.04■□□□□ 0.8
COL9A3-214ENST00000490398 SLC12A3P55017 1021 aa20.04■□□□□ 0.8
COL9A3-214ENST00000490398 COL19A1Q14993 1142 aa20.04■□□□□ 0.8
COL9A3-214ENST00000490398 FOXD4L5Q5VV16 416 aaPredicted RBP20.04■□□□□ 0.8
COL9A3-214ENST00000490398 GLB1LQ6UWU2 654 aa20.04■□□□□ 0.8
COL9A3-214ENST00000490398 HSCBQ8IWL3 235 aa20.04■□□□□ 0.8
COL9A3-214ENST00000490398 SLC39A11Q8N1S5 342 aa20.04■□□□□ 0.8
COL9A3-214ENST00000490398 FOXD4L4Q8WXT5 416 aaPredicted RBP20.04■□□□□ 0.8
COL9A3-214ENST00000490398 PGBD4Q96DM1 585 aa20.04■□□□□ 0.8
COL9A3-214ENST00000490398 ZNF558Q96NG5 402 aa20.04■□□□□ 0.8
COL9A3-214ENST00000490398 CLIC6Q96NY7 704 aa20.04■□□□□ 0.8
COL9A3-214ENST00000490398 APOL6Q9BWW8 343 aa20.04■□□□□ 0.8
COL9A3-214ENST00000490398 RSAD1Q9HA92 442 aa20.04■□□□□ 0.8
COL9A3-214ENST00000490398 FBXO2Q9UK22 296 aaPredicted RBP20.04■□□□□ 0.8
COL9A3-214ENST00000490398 TTC28Q96AY4 2481 aa20.03■□□□□ 0.8
COL9A3-214ENST00000490398 POMCP01189 267 aa20.03■□□□□ 0.8
COL9A3-214ENST00000490398 PLA2G4BP0C869 781 aa20.03■□□□□ 0.8
COL9A3-214ENST00000490398 ITGA4P13612 1032 aa20.03■□□□□ 0.8
COL9A3-214ENST00000490398 KCNA5P22460 613 aa20.03■□□□□ 0.8
COL9A3-214ENST00000490398 LTBRP36941 435 aa20.03■□□□□ 0.8
COL9A3-214ENST00000490398 PEX3P56589 373 aa20.03■□□□□ 0.8
COL9A3-214ENST00000490398 CACNB1Q02641 598 aaPredicted RBP20.03■□□□□ 0.8
COL9A3-214ENST00000490398 DLX2Q07687 328 aaPredicted RBP20.03■□□□□ 0.8
COL9A3-214ENST00000490398 KARSQ15046 597 aaKnown RBP20.03■□□□□ 0.8
COL9A3-214ENST00000490398 PCBP1Q15365 356 aaKnown RBP eCLIP20.03■□□□□ 0.8
COL9A3-214ENST00000490398 ARSHQ5FYA8 562 aa20.03■□□□□ 0.8
COL9A3-214ENST00000490398 NT5DC1Q5TFE4 455 aa20.03■□□□□ 0.8
COL9A3-214ENST00000490398 EEF1DP3Q658K8 133 aa20.03■□□□□ 0.8
COL9A3-214ENST00000490398 ZBTB8OSQ8IWT0 167 aa20.03■□□□□ 0.8
COL9A3-214ENST00000490398 DEPTORQ8TB45 409 aa20.03■□□□□ 0.8
COL9A3-214ENST00000490398 KIFAP3Q92845 792 aa20.03■□□□□ 0.8
COL9A3-214ENST00000490398 CCDC51Q96ER9 411 aa20.03■□□□□ 0.8
COL9A3-214ENST00000490398 AK8Q96MA6 479 aa20.03■□□□□ 0.8
COL9A3-214ENST00000490398 ZFP42Q96MM3 310 aa20.03■□□□□ 0.8
COL9A3-214ENST00000490398 NECAB3Q96P71 396 aaPredicted RBP20.03■□□□□ 0.8
COL9A3-214ENST00000490398 GBP3Q9H0R5 595 aa20.03■□□□□ 0.8
COL9A3-214ENST00000490398 CXCL16Q9H2A7 254 aa20.03■□□□□ 0.8
COL9A3-214ENST00000490398 PDZD7Q9H5P4 517 aa20.03■□□□□ 0.8
COL9A3-214ENST00000490398 IGFLR1Q9H665 355 aa20.03■□□□□ 0.8
COL9A3-214ENST00000490398 BLOC1S4Q9NUP1 217 aa20.03■□□□□ 0.8
COL9A3-214ENST00000490398 PRMT7Q9NVM4 692 aaPredicted RBP20.03■□□□□ 0.8
COL9A3-214ENST00000490398 CNTNAP2Q9UHC6 1331 aa20.02■□□□□ 0.8
COL9A3-214ENST00000490398 H3BQ06 376 aaPredicted RBP20.02■□□□□ 0.8
COL9A3-214ENST00000490398 ZC3H11AO75152 810 aaKnown RBP eCLIP20.02■□□□□ 0.8
COL9A3-214ENST00000490398 PRKCBP05771 671 aa20.02■□□□□ 0.8
COL9A3-214ENST00000490398 AKAP5P24588 427 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms