RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 HOXA3O43365 443 aaPredicted RBP4.55□□□□□ -1.68
CPSF3-205ENST00000489629 FAM20BO75063 409 aa4.55□□□□□ -1.68
CPSF3-205ENST00000489629 RPS6KA4O75676 772 aa4.55□□□□□ -1.68
CPSF3-205ENST00000489629 IPO13O94829 963 aaKnown RBP4.55□□□□□ -1.68
CPSF3-205ENST00000489629 NR4A1P22736 598 aa4.55□□□□□ -1.68
CPSF3-205ENST00000489629 LSSP48449 732 aa4.55□□□□□ -1.68
CPSF3-205ENST00000489629 GPR15P49685 360 aa4.55□□□□□ -1.68
CPSF3-205ENST00000489629 INHBEP58166 350 aa4.55□□□□□ -1.68
CPSF3-205ENST00000489629 TERF2Q15554 542 aa4.55□□□□□ -1.68
CPSF3-205ENST00000489629 FAM214AQ32MH5 1076 aa4.55□□□□□ -1.68
CPSF3-205ENST00000489629 KRTAP15-1Q3LI76 137 aa4.55□□□□□ -1.68
CPSF3-205ENST00000489629 DALRD3Q5D0E6 543 aaKnown RBP4.55□□□□□ -1.68
CPSF3-205ENST00000489629 TAS1R1Q7RTX1 841 aa4.55□□□□□ -1.68
CPSF3-205ENST00000489629 MRGPRGQ86SM5 289 aa4.55□□□□□ -1.68
CPSF3-205ENST00000489629 LYSMD2Q8IV50 215 aa4.55□□□□□ -1.68
CPSF3-205ENST00000489629 SLC41A1Q8IVJ1 513 aa4.55□□□□□ -1.68
CPSF3-205ENST00000489629 AHI1Q8N157 1196 aa4.55□□□□□ -1.68
CPSF3-205ENST00000489629 PPM1KQ8N3J5 372 aa4.55□□□□□ -1.68
CPSF3-205ENST00000489629 LENG9Q96B70 501 aa4.55□□□□□ -1.68
CPSF3-205ENST00000489629 PGBD4Q96DM1 585 aa4.55□□□□□ -1.68
CPSF3-205ENST00000489629 GPR101Q96P66 508 aaPredicted RBP4.55□□□□□ -1.68
CPSF3-205ENST00000489629 AGAP2Q99490 1192 aa4.55□□□□□ -1.68
CPSF3-205ENST00000489629 NRDE2Q9H7Z3 1164 aa4.55□□□□□ -1.68
CPSF3-205ENST00000489629 A0A1W2PR48 441 aa4.54□□□□□ -1.68
CPSF3-205ENST00000489629 NRP1O14786 923 aa4.54□□□□□ -1.68
CPSF3-205ENST00000489629 FOXN1O15353 648 aa4.54□□□□□ -1.68
CPSF3-205ENST00000489629 LSP1P33241 339 aa4.54□□□□□ -1.68
CPSF3-205ENST00000489629 ADCYAP1R1P41586 468 aa4.54□□□□□ -1.68
CPSF3-205ENST00000489629 COL10A1Q03692 680 aa4.54□□□□□ -1.68
CPSF3-205ENST00000489629 MRPL49Q13405 166 aaKnown RBP4.54□□□□□ -1.68
CPSF3-205ENST00000489629 CCDC178Q5BJE1 867 aa4.54□□□□□ -1.68
CPSF3-205ENST00000489629 METTL24Q5JXM2 366 aa4.54□□□□□ -1.68
CPSF3-205ENST00000489629 JAZF1Q86VZ6 243 aa4.54□□□□□ -1.68
CPSF3-205ENST00000489629 CXorf67Q86X51 503 aaPredicted RBP4.54□□□□□ -1.68
CPSF3-205ENST00000489629 RPUSD2Q8IZ73 545 aaKnown RBP4.54□□□□□ -1.68
CPSF3-205ENST00000489629 MSL3Q8N5Y2 521 aaKnown RBP4.54□□□□□ -1.68
CPSF3-205ENST00000489629 SLC25A43Q8WUT9 341 aaPredicted RBP4.54□□□□□ -1.68
CPSF3-205ENST00000489629 HAS1Q92839 578 aa4.54□□□□□ -1.68
CPSF3-205ENST00000489629 FERMT2Q96AC1 680 aa4.54□□□□□ -1.68
CPSF3-205ENST00000489629 PDCD2LQ9BRP1 358 aa4.54□□□□□ -1.68
CPSF3-205ENST00000489629 USP18Q9UMW8 372 aa4.54□□□□□ -1.68
CPSF3-205ENST00000489629 DMRT1Q9Y5R6 373 aa4.54□□□□□ -1.68
CPSF3-205ENST00000489629 FKBP9O95302 570 aa4.53□□□□□ -1.68
CPSF3-205ENST00000489629 GNAT2P19087 354 aa4.53□□□□□ -1.68
CPSF3-205ENST00000489629 HK1P19367 917 aa4.53□□□□□ -1.68
CPSF3-205ENST00000489629 ZFP36P26651 326 aaKnown RBP4.53□□□□□ -1.68
CPSF3-205ENST00000489629 PTGS2P35354 604 aa4.53□□□□□ -1.68
CPSF3-205ENST00000489629 CASRP41180 1078 aa4.53□□□□□ -1.68
CPSF3-205ENST00000489629 SCNN1BP51168 640 aa4.53□□□□□ -1.68
CPSF3-205ENST00000489629 PTTG1IPP53801 180 aa4.53□□□□□ -1.68
CPSF3-205ENST00000489629 MANFP55145 182 aaKnown RBP4.53□□□□□ -1.68
CPSF3-205ENST00000489629 FKBP9P1Q75LS8 142 aa4.53□□□□□ -1.68
CPSF3-205ENST00000489629 KIAA0907Q7Z7F0 614 aaPredicted RBP4.53□□□□□ -1.68
CPSF3-205ENST00000489629 OR52N2Q8NGI0 321 aa4.53□□□□□ -1.68
CPSF3-205ENST00000489629 GAB3Q8WWW8 586 aa4.53□□□□□ -1.68
CPSF3-205ENST00000489629 FEZ1Q99689 392 aa4.53□□□□□ -1.68
CPSF3-205ENST00000489629 LSM14BQ9BX40 385 aaKnown RBP4.53□□□□□ -1.68
CPSF3-205ENST00000489629 CPEB1Q9BZB8 566 aaKnown RBP4.53□□□□□ -1.68
CPSF3-205ENST00000489629 PRDM12Q9H4Q4 367 aa4.53□□□□□ -1.68
CPSF3-205ENST00000489629 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.53□□□□□ -1.68
CPSF3-205ENST00000489629 PLAAQ9Y263 795 aa4.53□□□□□ -1.68
CPSF3-205ENST00000489629 PPP2R3BQ9Y5P8 575 aa4.53□□□□□ -1.68
CPSF3-205ENST00000489629 MRPL42Q9Y6G3 142 aaKnown RBP4.53□□□□□ -1.68
CPSF3-205ENST00000489629 NUMBLQ9Y6R0 609 aa4.53□□□□□ -1.68
CPSF3-205ENST00000489629 A0A087X0B3 334 aa4.52□□□□□ -1.69
CPSF3-205ENST00000489629 ST20-MTHFSA0A0A6YYL1 179 aa4.52□□□□□ -1.69
CPSF3-205ENST00000489629 GSG1L2A8MUP6 293 aa4.52□□□□□ -1.69
CPSF3-205ENST00000489629 CDC45O75419 566 aa4.52□□□□□ -1.69
CPSF3-205ENST00000489629 WNT3AP56704 352 aa4.52□□□□□ -1.69
CPSF3-205ENST00000489629 OCRLQ01968 901 aa4.52□□□□□ -1.69
CPSF3-205ENST00000489629 FRMD7Q6ZUT3 714 aa4.52□□□□□ -1.69
CPSF3-205ENST00000489629 DOK3Q7L591 496 aa4.52□□□□□ -1.69
CPSF3-205ENST00000489629 ZNF276Q8N554 614 aa4.52□□□□□ -1.69
CPSF3-205ENST00000489629 OR5M3Q8NGP4 307 aa4.52□□□□□ -1.69
CPSF3-205ENST00000489629 OR2W6PQ8NHA6 318 aa4.52□□□□□ -1.69
CPSF3-205ENST00000489629 MFSD3Q96ES6 412 aa4.52□□□□□ -1.69
CPSF3-205ENST00000489629 CPPED1Q9BRF8 314 aaPredicted RBP4.52□□□□□ -1.69
CPSF3-205ENST00000489629 WNT8AQ9H1J5 351 aa4.52□□□□□ -1.69
CPSF3-205ENST00000489629 PRSS50Q9UI38 385 aa4.52□□□□□ -1.69
CPSF3-205ENST00000489629 FZD1Q9UP38 647 aa4.52□□□□□ -1.69
CPSF3-205ENST00000489629 HS3ST4Q9Y661 456 aa4.52□□□□□ -1.69
CPSF3-205ENST00000489629 TMEM191CA6NGB0 347 aa4.51□□□□□ -1.69
CPSF3-205ENST00000489629 TRIM24O15164 1050 aa4.51□□□□□ -1.69
CPSF3-205ENST00000489629 NRP2O60462 931 aa4.51□□□□□ -1.69
CPSF3-205ENST00000489629 RAMP2O60895 175 aa4.51□□□□□ -1.69
CPSF3-205ENST00000489629 DNAJC6O75061 913 aa4.51□□□□□ -1.69
CPSF3-205ENST00000489629 TRIM25Q14258 630 aaKnown RBP4.51□□□□□ -1.69
CPSF3-205ENST00000489629 SART3Q15020 963 aaKnown RBP4.51□□□□□ -1.69
CPSF3-205ENST00000489629 UBE3CQ15386 1083 aa4.51□□□□□ -1.69
CPSF3-205ENST00000489629 VPS72Q15906 364 aa4.51□□□□□ -1.69
CPSF3-205ENST00000489629 CSRP2Q16527 193 aa4.51□□□□□ -1.69
CPSF3-205ENST00000489629 LAIR1Q6GTX8 287 aa4.51□□□□□ -1.69
CPSF3-205ENST00000489629 GPRIN1Q7Z2K8 1008 aa4.51□□□□□ -1.69
CPSF3-205ENST00000489629 FAM83AQ86UY5 434 aa4.51□□□□□ -1.69
CPSF3-205ENST00000489629 IL17RAQ96F46 866 aa4.51□□□□□ -1.69
CPSF3-205ENST00000489629 TTPALQ9BTX7 342 aa4.51□□□□□ -1.69
CPSF3-205ENST00000489629 MLST8Q9BVC4 326 aa4.51□□□□□ -1.69
CPSF3-205ENST00000489629 EMC7Q9NPA0 242 aa4.51□□□□□ -1.69
CPSF3-205ENST00000489629 EVLQ9UI08 416 aaPredicted RBP4.51□□□□□ -1.69
CPSF3-205ENST00000489629 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms