RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 XRCC6P12956 609 aaKnown RBP eCLIP25.15■■□□□ 1.62
PTPN4-211ENST00000488279 HOXB8P17481 243 aaPredicted RBP25.15■■□□□ 1.62
PTPN4-211ENST00000488279 CA8P35219 290 aa25.15■■□□□ 1.62
PTPN4-211ENST00000488279 POU5F1BQ06416 359 aa25.15■■□□□ 1.62
PTPN4-211ENST00000488279 HERC4Q5GLZ8 1057 aaPredicted RBP25.15■■□□□ 1.62
PTPN4-211ENST00000488279 AGMOQ6ZNB7 445 aa25.15■■□□□ 1.62
PTPN4-211ENST00000488279 TMEM87AQ8NBN3 555 aa25.15■■□□□ 1.62
PTPN4-211ENST00000488279 CNNM3Q8NE01 707 aa25.15■■□□□ 1.62
PTPN4-211ENST00000488279 SUSD6Q92537 303 aa25.15■■□□□ 1.62
PTPN4-211ENST00000488279 IGSF21Q96ID5 467 aa25.15■■□□□ 1.62
PTPN4-211ENST00000488279 ZSCAN31Q96LW9 406 aaPredicted RBP25.15■■□□□ 1.62
PTPN4-211ENST00000488279 GBP3Q9H0R5 595 aa25.15■■□□□ 1.62
PTPN4-211ENST00000488279 TMEM60Q9H2L4 133 aa25.15■■□□□ 1.62
PTPN4-211ENST00000488279 MUTYHQ9UIF7 546 aa25.15■■□□□ 1.62
PTPN4-211ENST00000488279 CNTNAP2Q9UHC6 1331 aa25.14■■□□□ 1.62
PTPN4-211ENST00000488279 LOC730098B7Z3J9 87 aa25.14■■□□□ 1.62
PTPN4-211ENST00000488279 AXLP30530 894 aa25.14■■□□□ 1.62
PTPN4-211ENST00000488279 ARL2P36404 184 aa25.14■■□□□ 1.62
PTPN4-211ENST00000488279 RARRES1P49788 294 aa25.14■■□□□ 1.62
PTPN4-211ENST00000488279 UBXN11Q5T124 520 aa25.14■■□□□ 1.62
PTPN4-211ENST00000488279 DDX53Q86TM3 631 aaKnown RBP25.14■■□□□ 1.62
PTPN4-211ENST00000488279 TMEM173Q86WV6 379 aaPredicted RBP25.14■■□□□ 1.62
PTPN4-211ENST00000488279 PIGOQ8TEQ8 1089 aa25.14■■□□□ 1.62
PTPN4-211ENST00000488279 CASP10Q92851 521 aa25.14■■□□□ 1.62
PTPN4-211ENST00000488279 FAM122AQ96E09 287 aa25.14■■□□□ 1.62
PTPN4-211ENST00000488279 S1PR5Q9H228 398 aa25.14■■□□□ 1.62
PTPN4-211ENST00000488279 RSAD1Q9HA92 442 aa25.14■■□□□ 1.62
PTPN4-211ENST00000488279 UBN1Q9NPG3 1134 aa25.14■■□□□ 1.62
PTPN4-211ENST00000488279 POTEMA6NI47 508 aa25.13■■□□□ 1.61
PTPN4-211ENST00000488279 INO80B-WBP1J3KQ70 363 aa25.13■■□□□ 1.61
PTPN4-211ENST00000488279 HMGN5P82970 282 aaKnown RBP25.13■■□□□ 1.61
PTPN4-211ENST00000488279 GIT2Q14161 759 aa25.13■■□□□ 1.61
PTPN4-211ENST00000488279 NOTUMQ6P988 496 aa25.13■■□□□ 1.61
PTPN4-211ENST00000488279 SYCE2Q6PIF2 218 aa25.13■■□□□ 1.61
PTPN4-211ENST00000488279 ZNF280BQ86YH2 543 aa25.13■■□□□ 1.61
PTPN4-211ENST00000488279 IFNLR1Q8IU57 520 aaPredicted RBP25.13■■□□□ 1.61
PTPN4-211ENST00000488279 FAM193BQ96PV7 902 aaPredicted RBP25.13■■□□□ 1.61
PTPN4-211ENST00000488279 FOXP1Q9H334 677 aaPredicted RBP25.13■■□□□ 1.61
PTPN4-211ENST00000488279 DNAJB4Q9UDY4 337 aa25.13■■□□□ 1.61
PTPN4-211ENST00000488279 A0A087WWV3 80 aa25.12■■□□□ 1.61
PTPN4-211ENST00000488279 TSPAN1O60635 241 aa25.12■■□□□ 1.61
PTPN4-211ENST00000488279 CLASP2O75122 1294 aaKnown RBP25.12■■□□□ 1.61
PTPN4-211ENST00000488279 ALDH2P05091 517 aa25.12■■□□□ 1.61
PTPN4-211ENST00000488279 NCLP19338 710 aaKnown RBP25.12■■□□□ 1.61
PTPN4-211ENST00000488279 PLA2G5P39877 138 aa25.12■■□□□ 1.61
PTPN4-211ENST00000488279 RBM25P49756 843 aaKnown RBP25.12■■□□□ 1.61
PTPN4-211ENST00000488279 CBX2Q14781 532 aaPredicted RBP25.12■■□□□ 1.61
PTPN4-211ENST00000488279 ASAP3Q8TDY4 903 aa25.12■■□□□ 1.61
PTPN4-211ENST00000488279 CCDC51Q96ER9 411 aa25.12■■□□□ 1.61
PTPN4-211ENST00000488279 RPGRIP1Q96KN7 1286 aa25.12■■□□□ 1.61
PTPN4-211ENST00000488279 APOL5Q9BWW9 433 aa25.12■■□□□ 1.61
PTPN4-211ENST00000488279 ZBP1Q9H171 429 aa25.12■■□□□ 1.61
PTPN4-211ENST00000488279 TUFT1Q9NNX1 390 aa25.12■■□□□ 1.61
PTPN4-211ENST00000488279 SH2B1Q9NRF2 756 aaPredicted RBP25.12■■□□□ 1.61
PTPN4-211ENST00000488279 STK39Q9UEW8 545 aa25.12■■□□□ 1.61
PTPN4-211ENST00000488279 HCFC2Q9Y5Z7 792 aa25.12■■□□□ 1.61
PTPN4-211ENST00000488279 SPATA31C1P0DKV0 1188 aa25.11■■□□□ 1.61
PTPN4-211ENST00000488279 CTSAP10619 480 aa25.11■■□□□ 1.61
PTPN4-211ENST00000488279 ITGA4P13612 1032 aa25.11■■□□□ 1.61
PTPN4-211ENST00000488279 SLC11A1P49279 550 aa25.11■■□□□ 1.61
PTPN4-211ENST00000488279 ORC2Q13416 577 aaPredicted RBP25.11■■□□□ 1.61
PTPN4-211ENST00000488279 CAPSQ13938 189 aa25.11■■□□□ 1.61
PTPN4-211ENST00000488279 ZNF174Q15697 407 aa25.11■■□□□ 1.61
PTPN4-211ENST00000488279 TPRNQ4KMQ1 711 aa25.11■■□□□ 1.61
PTPN4-211ENST00000488279 CATSPER3Q86XQ3 398 aa25.11■■□□□ 1.61
PTPN4-211ENST00000488279 FAM184AQ8NB25 1140 aa25.11■■□□□ 1.61
PTPN4-211ENST00000488279 FBXO18Q8NFZ0 1043 aa25.11■■□□□ 1.61
PTPN4-211ENST00000488279 NFKBIZQ9BYH8 718 aa25.11■■□□□ 1.61
PTPN4-211ENST00000488279 IRAK3Q9Y616 596 aa25.11■■□□□ 1.61
PTPN4-211ENST00000488279 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP25.1■■□□□ 1.61
PTPN4-211ENST00000488279 DDHD2O94830 711 aa25.1■■□□□ 1.61
PTPN4-211ENST00000488279 POMCP01189 267 aa25.1■■□□□ 1.61
PTPN4-211ENST00000488279 GLRA2P23416 452 aa25.1■■□□□ 1.61
PTPN4-211ENST00000488279 AFF1P51825 1210 aaKnown RBP25.1■■□□□ 1.61
PTPN4-211ENST00000488279 MBTD1Q05BQ5 628 aa25.1■■□□□ 1.61
PTPN4-211ENST00000488279 GNL2Q13823 731 aaKnown RBP25.1■■□□□ 1.61
PTPN4-211ENST00000488279 SMG8Q8ND04 991 aaKnown RBP25.1■■□□□ 1.61
PTPN4-211ENST00000488279 CPB2Q96IY4 423 aa25.1■■□□□ 1.61
PTPN4-211ENST00000488279 NACC1Q96RE7 527 aa25.1■■□□□ 1.61
PTPN4-211ENST00000488279 TMEM175Q9BSA9 504 aa25.1■■□□□ 1.61
PTPN4-211ENST00000488279 CSRNP2Q9H175 543 aa25.1■■□□□ 1.61
PTPN4-211ENST00000488279 FAN1Q9Y2M0 1017 aa25.1■■□□□ 1.61
PTPN4-211ENST00000488279 IPPQ9Y573 584 aa25.1■■□□□ 1.61
PTPN4-211ENST00000488279 USO1O60763 962 aaKnown RBP25.09■■□□□ 1.61
PTPN4-211ENST00000488279 OR52Z1P0C646 297 aa25.09■■□□□ 1.61
PTPN4-211ENST00000488279 CES5AQ6NT32 575 aa25.09■■□□□ 1.61
PTPN4-211ENST00000488279 ERMNQ8TAM6 284 aa25.09■■□□□ 1.61
PTPN4-211ENST00000488279 BCL7CQ8WUZ0 217 aaPredicted RBP25.09■■□□□ 1.61
PTPN4-211ENST00000488279 AUTS2Q8WXX7 1259 aa25.09■■□□□ 1.61
PTPN4-211ENST00000488279 EDAQ92838 391 aa25.09■■□□□ 1.61
PTPN4-211ENST00000488279 KIF2CQ99661 725 aa25.09■■□□□ 1.61
PTPN4-211ENST00000488279 POLR3CQ9BUI4 534 aaPredicted RBP25.09■■□□□ 1.61
PTPN4-211ENST00000488279 EIF2AQ9BY44 585 aaKnown RBP25.09■■□□□ 1.61
PTPN4-211ENST00000488279 TRIM6Q9C030 488 aaPredicted RBP25.09■■□□□ 1.61
PTPN4-211ENST00000488279 POLR3FQ9H1D9 316 aaPredicted RBP25.09■■□□□ 1.61
PTPN4-211ENST00000488279 B4GALT3O60512 393 aa25.08■■□□□ 1.61
PTPN4-211ENST00000488279 MED24O75448 989 aa25.08■■□□□ 1.61
PTPN4-211ENST00000488279 ITIH3Q06033 890 aa25.08■■□□□ 1.61
PTPN4-211ENST00000488279 MAEAQ7L5Y9 396 aa25.08■■□□□ 1.61
PTPN4-211ENST00000488279 HACE1Q8IYU2 909 aa25.08■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms