RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 DIS3Q9Y2L1 958 aaKnown RBP19.4■□□□□ 0.7
VIM-206ENST00000487938 DCDC2CA8MYV0 355 aa19.39■□□□□ 0.69
VIM-206ENST00000487938 DHX15O43143 795 aaKnown RBP19.39■□□□□ 0.69
VIM-206ENST00000487938 ERLIN2O94905 339 aa19.39■□□□□ 0.69
VIM-206ENST00000487938 SGPL1O95470 568 aa19.39■□□□□ 0.69
VIM-206ENST00000487938 CAP2P40123 477 aa19.39■□□□□ 0.69
VIM-206ENST00000487938 MARCKSL1P49006 195 aa19.39■□□□□ 0.69
VIM-206ENST00000487938 RUFY4Q6ZNE9 571 aa19.39■□□□□ 0.69
VIM-206ENST00000487938 CPXCR1Q8N123 301 aa19.39■□□□□ 0.69
VIM-206ENST00000487938 MYCBPAPQ8TBZ2 947 aa19.39■□□□□ 0.69
VIM-206ENST00000487938 ACCSQ96QU6 501 aa19.39■□□□□ 0.69
VIM-206ENST00000487938 TMEM206Q9H813 350 aa19.39■□□□□ 0.69
VIM-206ENST00000487938 GPRC5CQ9NQ84 441 aa19.39■□□□□ 0.69
VIM-206ENST00000487938 HSPBP1Q9NZL4 362 aa19.39■□□□□ 0.69
VIM-206ENST00000487938 CNOT8Q9UFF9 292 aaKnown RBP19.39■□□□□ 0.69
VIM-206ENST00000487938 DAAM1Q9Y4D1 1078 aa19.39■□□□□ 0.69
VIM-206ENST00000487938 CETN1Q12798 172 aa19.39■□□□□ 0.69
VIM-206ENST00000487938 RSBN1LQ6PCB5 846 aaPredicted RBP19.39■□□□□ 0.69
VIM-206ENST00000487938 FMNL3Q8IVF7 1028 aa19.39■□□□□ 0.69
VIM-206ENST00000487938 PCDHB18PQ96TA0 734 aa19.39■□□□□ 0.69
VIM-206ENST00000487938 SNX24Q9Y343 169 aa19.39■□□□□ 0.69
VIM-206ENST00000487938 COL2A1P02458 1487 aaPredicted RBP19.38■□□□□ 0.69
VIM-206ENST00000487938 ATMINO43313 823 aaPredicted RBP19.38■□□□□ 0.69
VIM-206ENST00000487938 VCAM1P19320 739 aa19.38■□□□□ 0.69
VIM-206ENST00000487938 RXRBP28702 533 aa19.38■□□□□ 0.69
VIM-206ENST00000487938 RARRES1P49788 294 aa19.38■□□□□ 0.69
VIM-206ENST00000487938 MESDQ14696 234 aa19.38■□□□□ 0.69
VIM-206ENST00000487938 KRT71Q3SY84 523 aa19.38■□□□□ 0.69
VIM-206ENST00000487938 RHOT2Q8IXI1 618 aa19.38■□□□□ 0.69
VIM-206ENST00000487938 ARFGAP2Q8N6H7 521 aa19.38■□□□□ 0.69
VIM-206ENST00000487938 FMO2Q99518 471 aa19.38■□□□□ 0.69
VIM-206ENST00000487938 ERP44Q9BS26 406 aa19.38■□□□□ 0.69
VIM-206ENST00000487938 RAB17Q9H0T7 212 aa19.38■□□□□ 0.69
VIM-206ENST00000487938 HOMER2Q9NSB8 354 aa19.38■□□□□ 0.69
VIM-206ENST00000487938 GOLGA6L10A0A0M3HER8 536 aa19.37■□□□□ 0.69
VIM-206ENST00000487938 SLC16A4O15374 487 aa19.37■□□□□ 0.69
VIM-206ENST00000487938 HSD17B4P51659 736 aa19.37■□□□□ 0.69
VIM-206ENST00000487938 SPP2Q13103 211 aa19.37■□□□□ 0.69
VIM-206ENST00000487938 MYBPC2Q14324 1141 aa19.37■□□□□ 0.69
VIM-206ENST00000487938 EPC2Q52LR7 807 aa19.37■□□□□ 0.69
VIM-206ENST00000487938 DUPD1Q68J44 220 aa19.37■□□□□ 0.69
VIM-206ENST00000487938 HAUS6Q7Z4H7 955 aa19.37■□□□□ 0.69
VIM-206ENST00000487938 TEX2Q8IWB9 1127 aa19.37■□□□□ 0.69
VIM-206ENST00000487938 XXYLT1Q8NBI6 393 aa19.37■□□□□ 0.69
VIM-206ENST00000487938 ELMO3Q96BJ8 720 aa19.37■□□□□ 0.69
VIM-206ENST00000487938 C18orf8Q96DM3 657 aa19.37■□□□□ 0.69
VIM-206ENST00000487938 NAP1L3Q99457 506 aaPredicted RBP19.37■□□□□ 0.69
VIM-206ENST00000487938 ZNF536O15090 1300 aa19.37■□□□□ 0.69
VIM-206ENST00000487938 PLS3P13797 630 aa19.37■□□□□ 0.69
VIM-206ENST00000487938 PLTPP55058 493 aa19.37■□□□□ 0.69
VIM-206ENST00000487938 PEX3P56589 373 aa19.37■□□□□ 0.69
VIM-206ENST00000487938 MAGOHP61326 146 aaKnown RBP19.37■□□□□ 0.69
VIM-206ENST00000487938 GPC5P78333 572 aa19.37■□□□□ 0.69
VIM-206ENST00000487938 IFFO1Q0D2I5 559 aa19.37■□□□□ 0.69
VIM-206ENST00000487938 BIRC3Q13489 604 aa19.37■□□□□ 0.69
VIM-206ENST00000487938 TNIP1Q15025 636 aa19.37■□□□□ 0.69
VIM-206ENST00000487938 TKFCQ3LXA3 575 aa19.37■□□□□ 0.69
VIM-206ENST00000487938 SUPT20HQ8NEM7 779 aa19.37■□□□□ 0.69
VIM-206ENST00000487938 MAGOHBQ96A72 148 aaKnown RBP19.37■□□□□ 0.69
VIM-206ENST00000487938 AGO4Q9HCK5 861 aaKnown RBP19.37■□□□□ 0.69
VIM-206ENST00000487938 PLA2G6O60733 806 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 CHRNB2P17787 502 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 RFX1P22670 979 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 PTGER2P43116 358 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 MRPS9P82933 396 aaKnown RBP19.36■□□□□ 0.69
VIM-206ENST00000487938 MAP2K1Q02750 393 aaPredicted RBP19.36■□□□□ 0.69
VIM-206ENST00000487938 DGKZQ13574 1117 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 CPNE8Q86YQ8 564 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 OGFOD1Q8N543 542 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 OTUD6BQ8N6M0 293 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 NEK9Q8TD19 979 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 BTBD6Q96KE9 485 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 TMEM117Q9H0C3 514 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 SLC12A6Q9UHW9 1150 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 BACH1O14867 736 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 CYP26A1O43174 497 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 CPP00450 1065 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 ICAM1P05362 532 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 ALAS1P13196 640 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 COMTP21964 271 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 YWHABP31946 246 aaKnown RBP19.36■□□□□ 0.69
VIM-206ENST00000487938 QARSP47897 775 aaKnown RBP19.36■□□□□ 0.69
VIM-206ENST00000487938 UGCGQ16739 394 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 NOP9Q86U38 636 aaKnown RBP19.36■□□□□ 0.69
VIM-206ENST00000487938 JAMLQ86YT9 394 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 ZDHHC14Q8IZN3 488 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 CLEC4DQ8WXI8 215 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 KAT2BQ92831 832 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 ZDHHC18Q9NUE0 388 aa19.36■□□□□ 0.69
VIM-206ENST00000487938 PPFIA2O75334 1257 aa19.35■□□□□ 0.69
VIM-206ENST00000487938 KIAA0754O94854 1291 aa19.35■□□□□ 0.69
VIM-206ENST00000487938 FAM107AO95990 144 aa19.35■□□□□ 0.69
VIM-206ENST00000487938 ADRB2P07550 413 aa19.35■□□□□ 0.69
VIM-206ENST00000487938 PPP2R2AP63151 447 aa19.35■□□□□ 0.69
VIM-206ENST00000487938 SPDYE2Q495Y8 402 aa19.35■□□□□ 0.69
VIM-206ENST00000487938 AGBL2Q5U5Z8 902 aa19.35■□□□□ 0.69
VIM-206ENST00000487938 SLC47A2Q86VL8 602 aa19.35■□□□□ 0.69
VIM-206ENST00000487938 PPM1KQ8N3J5 372 aa19.35■□□□□ 0.69
VIM-206ENST00000487938 UBL4BQ8N7F7 174 aa19.35■□□□□ 0.69
VIM-206ENST00000487938 CCDC127Q96BQ5 260 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms