RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 WNT16Q9UBV4 365 aa17.26■□□□□ 0.35
MCF2L-228ENST00000487354 FBXL21Q9UKT6 434 aa17.26■□□□□ 0.35
MCF2L-228ENST00000487354 GPR179Q6PRD1 2367 aa17.25■□□□□ 0.35
MCF2L-228ENST00000487354 CLUHO75153 1309 aa17.25■□□□□ 0.35
MCF2L-228ENST00000487354 F8W810 466 aa17.25■□□□□ 0.35
MCF2L-228ENST00000487354 NRP1O14786 923 aa17.25■□□□□ 0.35
MCF2L-228ENST00000487354 SKIP12755 728 aa17.25■□□□□ 0.35
MCF2L-228ENST00000487354 GNA11P29992 359 aa17.25■□□□□ 0.35
MCF2L-228ENST00000487354 HOXA11P31270 313 aaPredicted RBP17.25■□□□□ 0.35
MCF2L-228ENST00000487354 CDC42EP1Q00587 391 aa17.25■□□□□ 0.35
MCF2L-228ENST00000487354 Q4G0T1 1027 aa17.25■□□□□ 0.35
MCF2L-228ENST00000487354 PLA2G4FQ68DD2 849 aa17.25■□□□□ 0.35
MCF2L-228ENST00000487354 CATSPER4Q7RTX7 472 aa17.25■□□□□ 0.35
MCF2L-228ENST00000487354 SKAP1Q86WV1 359 aa17.25■□□□□ 0.35
MCF2L-228ENST00000487354 TMEM87AQ8NBN3 555 aa17.25■□□□□ 0.35
MCF2L-228ENST00000487354 ETNPPLQ8TBG4 499 aa17.25■□□□□ 0.35
MCF2L-228ENST00000487354 NLRP4Q96MN2 994 aa17.25■□□□□ 0.35
MCF2L-228ENST00000487354 TMEM175Q9BSA9 504 aa17.25■□□□□ 0.35
MCF2L-228ENST00000487354 HERC2P3Q9BVR0 1158 aa17.25■□□□□ 0.35
MCF2L-228ENST00000487354 VPS54Q9P1Q0 977 aa17.25■□□□□ 0.35
MCF2L-228ENST00000487354 R4GN57 208 aa17.25■□□□□ 0.35
MCF2L-228ENST00000487354 TEX28O15482 410 aa17.24■□□□□ 0.35
MCF2L-228ENST00000487354 RFPL2O75678 378 aa17.24■□□□□ 0.35
MCF2L-228ENST00000487354 TDP2O95551 362 aa17.24■□□□□ 0.35
MCF2L-228ENST00000487354 SOD2P04179 222 aa17.24■□□□□ 0.35
MCF2L-228ENST00000487354 USP11P51784 963 aa17.24■□□□□ 0.35
MCF2L-228ENST00000487354 MIER3Q7Z3K6 550 aa17.24■□□□□ 0.35
MCF2L-228ENST00000487354 SLC44A3Q8N4M1 653 aa17.24■□□□□ 0.35
MCF2L-228ENST00000487354 ZNF579Q8NAF0 562 aaKnown RBP17.24■□□□□ 0.35
MCF2L-228ENST00000487354 MBOAT7Q96N66 472 aa17.24■□□□□ 0.35
MCF2L-228ENST00000487354 RPS6KC1Q96S38 1066 aa17.24■□□□□ 0.35
MCF2L-228ENST00000487354 TBC1D17Q9HA65 648 aa17.24■□□□□ 0.35
MCF2L-228ENST00000487354 RSAD1Q9HA92 442 aa17.24■□□□□ 0.35
MCF2L-228ENST00000487354 MRPL17Q9NRX2 175 aaKnown RBP17.24■□□□□ 0.35
MCF2L-228ENST00000487354 CA14Q9ULX7 337 aa17.24■□□□□ 0.35
MCF2L-228ENST00000487354 NOTCH4Q99466 2003 aa17.23■□□□□ 0.35
MCF2L-228ENST00000487354 KMT2BQ9UMN6 2715 aaPredicted RBP17.23■□□□□ 0.35
MCF2L-228ENST00000487354 CYP3A7-CYP3A51PA0A087WV96 503 aa17.23■□□□□ 0.35
MCF2L-228ENST00000487354 CCDC195A0A1B0GUA6 201 aa17.23■□□□□ 0.35
MCF2L-228ENST00000487354 M0R2N6 131 aa17.23■□□□□ 0.35
MCF2L-228ENST00000487354 C2CD2LO14523 706 aa17.23■□□□□ 0.35
MCF2L-228ENST00000487354 INPPL1O15357 1258 aa17.23■□□□□ 0.35
MCF2L-228ENST00000487354 LMNAP02545 664 aaKnown RBP17.23■□□□□ 0.35
MCF2L-228ENST00000487354 CYP3A7P24462 503 aa17.23■□□□□ 0.35
MCF2L-228ENST00000487354 KIAA0319Q5VV43 1072 aa17.23■□□□□ 0.35
MCF2L-228ENST00000487354 Q6ZUG5 572 aa17.23■□□□□ 0.35
MCF2L-228ENST00000487354 COLGALT2Q8IYK4 626 aa17.23■□□□□ 0.35
MCF2L-228ENST00000487354 SMG8Q8ND04 991 aaKnown RBP17.23■□□□□ 0.35
MCF2L-228ENST00000487354 TBCKQ8TEA7 893 aa17.23■□□□□ 0.35
MCF2L-228ENST00000487354 RIN2Q8WYP3 895 aaPredicted RBP17.23■□□□□ 0.35
MCF2L-228ENST00000487354 KCNB2Q92953 911 aa17.23■□□□□ 0.35
MCF2L-228ENST00000487354 YTHDC1Q96MU7 727 aaKnown RBP17.23■□□□□ 0.35
MCF2L-228ENST00000487354 INO80BQ9C086 356 aaPredicted RBP17.23■□□□□ 0.35
MCF2L-228ENST00000487354 RXFP1Q9HBX9 757 aa17.23■□□□□ 0.35
MCF2L-228ENST00000487354 WRAP73Q9P2S5 460 aaPredicted RBP17.23■□□□□ 0.35
MCF2L-228ENST00000487354 NAP1L2Q9ULW6 460 aaPredicted RBP17.23■□□□□ 0.35
MCF2L-228ENST00000487354 CNTNAP2Q9UHC6 1331 aa17.22■□□□□ 0.35
MCF2L-228ENST00000487354 VWA8A3KMH1 1905 aa17.22■□□□□ 0.35
MCF2L-228ENST00000487354 CCDC196A0A1B0GTZ2 297 aa17.22■□□□□ 0.35
MCF2L-228ENST00000487354 EML1O00423 815 aa17.22■□□□□ 0.35
MCF2L-228ENST00000487354 POMCP01189 267 aa17.22■□□□□ 0.35
MCF2L-228ENST00000487354 MYBP10242 640 aa17.22■□□□□ 0.35
MCF2L-228ENST00000487354 SRFP11831 508 aa17.22■□□□□ 0.35
MCF2L-228ENST00000487354 GLULP15104 373 aa17.22■□□□□ 0.35
MCF2L-228ENST00000487354 DSC1Q08554 894 aa17.22■□□□□ 0.35
MCF2L-228ENST00000487354 NPY5RQ15761 445 aa17.22■□□□□ 0.35
MCF2L-228ENST00000487354 URGCPQ8TCY9 931 aa17.22■□□□□ 0.35
MCF2L-228ENST00000487354 BICD2Q8TD16 824 aa17.22■□□□□ 0.35
MCF2L-228ENST00000487354 GPR152Q8TDT2 470 aa17.22■□□□□ 0.35
MCF2L-228ENST00000487354 BRF1Q92994 677 aa17.22■□□□□ 0.35
MCF2L-228ENST00000487354 PGBD4Q96DM1 585 aa17.22■□□□□ 0.35
MCF2L-228ENST00000487354 RNF26Q9BY78 433 aaPredicted RBP17.22■□□□□ 0.35
MCF2L-228ENST00000487354 AGXT2Q9BYV1 514 aa17.22■□□□□ 0.35
MCF2L-228ENST00000487354 STK39Q9UEW8 545 aa17.22■□□□□ 0.35
MCF2L-228ENST00000487354 FAN1Q9Y2M0 1017 aa17.22■□□□□ 0.35
MCF2L-228ENST00000487354 COL4A3BPQ9Y5P4 624 aa17.22■□□□□ 0.35
MCF2L-228ENST00000487354 POTEMA6NI47 508 aa17.21■□□□□ 0.35
MCF2L-228ENST00000487354 SPDYE4A6NLX3 237 aa17.21■□□□□ 0.35
MCF2L-228ENST00000487354 ANHXE9PGG2 379 aa17.21■□□□□ 0.35
MCF2L-228ENST00000487354 URODP06132 367 aa17.21■□□□□ 0.35
MCF2L-228ENST00000487354 DCNP07585 359 aaKnown RBP17.21■□□□□ 0.35
MCF2L-228ENST00000487354 NCLP19338 710 aaKnown RBP17.21■□□□□ 0.35
MCF2L-228ENST00000487354 GBP2P32456 591 aaPredicted RBP17.21■□□□□ 0.35
MCF2L-228ENST00000487354 DNM2P50570 870 aa17.21■□□□□ 0.35
MCF2L-228ENST00000487354 AK2P54819 239 aa17.21■□□□□ 0.35
MCF2L-228ENST00000487354 NPEPPSP55786 919 aa17.21■□□□□ 0.35
MCF2L-228ENST00000487354 IRX6P78412 446 aaPredicted RBP17.21■□□□□ 0.35
MCF2L-228ENST00000487354 HTR4Q13639 388 aa17.21■□□□□ 0.35
MCF2L-228ENST00000487354 KIAA2013Q8IYS2 634 aa17.21■□□□□ 0.35
MCF2L-228ENST00000487354 MAML2Q8IZL2 1156 aaPredicted RBP17.21■□□□□ 0.35
MCF2L-228ENST00000487354 CCDC148Q8NFR7 591 aa17.21■□□□□ 0.35
MCF2L-228ENST00000487354 RNF39Q9H2S5 420 aa17.21■□□□□ 0.35
MCF2L-228ENST00000487354 SEMA4AQ9H3S1 761 aa17.21■□□□□ 0.35
MCF2L-228ENST00000487354 VAV3Q9UKW4 847 aa17.21■□□□□ 0.35
MCF2L-228ENST00000487354 PRG3Q9Y2Y8 225 aaPredicted RBP17.21■□□□□ 0.35
MCF2L-228ENST00000487354 CACNA1BQ00975 2339 aa17.2■□□□□ 0.34
MCF2L-228ENST00000487354 DDX11L8A8MPP1 907 aa17.2■□□□□ 0.34
MCF2L-228ENST00000487354 GLUD1P00367 558 aa17.2■□□□□ 0.34
MCF2L-228ENST00000487354 ALDH2P05091 517 aa17.2■□□□□ 0.34
MCF2L-228ENST00000487354 ADH1AP07327 375 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms