RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 GABPAQ06546 454 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 DRP2Q13474 957 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 FBXW10Q5XX13 1052 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 PLA2G4FQ68DD2 849 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 LMBRD2Q68DH5 695 aaPredicted RBP11.8□□□□□ -0.52
HDAC6-228ENST00000486227 OR6B2Q6IFH4 312 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 APOBEC3HQ6NTF7 200 aaKnown RBP11.8□□□□□ -0.52
HDAC6-228ENST00000486227 KSR1Q8IVT5 923 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 ARHGAP24Q8N264 748 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 MCUR1Q96AQ8 359 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 ZNF446Q9NWS9 450 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 ANAPC7Q9UJX3 599 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 PACSIN2Q9UNF0 486 aaPredicted RBP11.8□□□□□ -0.52
HDAC6-228ENST00000486227 CSPG5O95196 566 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 ZRANB2O95218 330 aaKnown RBP eCLIP11.8□□□□□ -0.52
HDAC6-228ENST00000486227 STAT5BP51692 787 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 DHX9Q08211 1270 aaKnown RBP11.8□□□□□ -0.52
HDAC6-228ENST00000486227 CUL1Q13616 776 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 MUM1Q2TAK8 710 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 RFX6Q8HWS3 928 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 ZFPM1Q8IX07 1006 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.8□□□□□ -0.528e-10■■□□□ 12.3
HDAC6-228ENST00000486227 TAAR1Q96RJ0 339 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 RIT2Q99578 217 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 ITIH6Q6UXX5 1313 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 MED7O43513 233 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 CIB2O75838 187 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 GGPS1O95749 300 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 PHKA2P46019 1235 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 KLK7P49862 253 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 MMP14P50281 582 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 IRAK1P51617 712 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 NPEPPSP55786 919 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 GPC5P78333 572 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 NLRP14Q86W24 1093 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 KLHL29Q96CT2 875 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 CALN1Q9BXU9 219 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 KNDC1Q76NI1 1749 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 SGK1O00141 431 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 ECEL1O95672 775 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 FTLP02792 175 aaPredicted RBP11.79□□□□□ -0.52
HDAC6-228ENST00000486227 ATP1A1P05023 1023 aaKnown RBP11.79□□□□□ -0.52
HDAC6-228ENST00000486227 HSPA6P17066 643 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 EIF3BP55884 814 aaKnown RBP11.79□□□□□ -0.52
HDAC6-228ENST00000486227 ARPP19P56211 112 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 EVX2Q03828 476 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 TRIP13Q15645 432 aaPredicted RBP11.79□□□□□ -0.52
HDAC6-228ENST00000486227 EDRF1Q3B7T1 1238 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 LGSNQ5TDP6 509 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 PDZD4Q76G19 769 aaPredicted RBP11.79□□□□□ -0.52
HDAC6-228ENST00000486227 ERICH1Q86X53 443 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 TMEM143Q96AN5 459 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 TOPORSQ9NS56 1045 aaPredicted RBP11.79□□□□□ -0.52
HDAC6-228ENST00000486227 NOP53Q9NZM5 478 aaKnown RBP11.79□□□□□ -0.52
HDAC6-228ENST00000486227 AGO2Q9UKV8 859 aaKnown RBP11.79□□□□□ -0.52
HDAC6-228ENST00000486227 NOVA2Q9UNW9 492 aaKnown RBP11.79□□□□□ -0.52
HDAC6-228ENST00000486227 CYTH3O43739 400 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 CYP11B2P19099 503 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 EPHX2P34913 555 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 RWDD2BP57060 319 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 TKFCQ3LXA3 575 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 XKR3Q5GH77 459 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 TWF2Q6IBS0 349 aaKnown RBP11.79□□□□□ -0.52
HDAC6-228ENST00000486227 LRRC31Q6UY01 552 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 IL17RAQ96F46 866 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 OSBPL9Q96SU4 736 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 KBTBD4Q9NVX7 518 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 A6NJR5 290 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 ZBBXA8MT70 800 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 H3BQF6 201 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 MED24O75448 989 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 DGAT1O75907 488 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 OATP04181 439 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 TAL1P17542 331 aaPredicted RBP11.79□□□□□ -0.52
HDAC6-228ENST00000486227 ZNF131P52739 623 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 DACT2Q5SW24 774 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 NME8Q8N427 588 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 C11orf70Q9BRQ4 267 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 PLAAQ9Y263 795 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 TMX2Q9Y320 296 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 GMNCA6NCL1 334 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 TXNP10599 105 aaKnown RBP11.79□□□□□ -0.52
HDAC6-228ENST00000486227 SLC9A1P19634 815 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 SH3BGRP55822 239 aaPredicted RBP11.79□□□□□ -0.52
HDAC6-228ENST00000486227 ACTN3Q08043 901 aaPredicted RBP11.79□□□□□ -0.52
HDAC6-228ENST00000486227 CFAP157Q5JU67 520 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 PPP1R2P3Q6NXS1 205 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 CCNI2Q6ZMN8 369 aaPredicted RBP11.79□□□□□ -0.52
HDAC6-228ENST00000486227 FBXL13Q8NEE6 735 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 GMCL1Q96IK5 515 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 RBAKQ9NYW8 714 aaPredicted RBP11.79□□□□□ -0.52
HDAC6-228ENST00000486227 HSPBP1Q9NZL4 362 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 TRIM10Q9UDY6 481 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 SUFUQ9UMX1 484 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 PITPNM2Q9BZ72 1349 aa11.79□□□□□ -0.52
HDAC6-228ENST00000486227 TYW5A2RUC4 315 aaKnown RBP11.78□□□□□ -0.52
HDAC6-228ENST00000486227 SOX5P35711 763 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 PARP9Q8IXQ6 854 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 GPD1LQ8N335 351 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 BBOF1Q8ND07 529 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms