RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	ECHDC2	Q86YB7	292 aa		11.87	□□□□□ -0.51
HMGN1-215	ENST00000485550	ETNPPL	Q8TBG4	499 aa		11.87	□□□□□ -0.51
HMGN1-215	ENST00000485550	FEZF2	Q8TBJ5	459 aa		11.87	□□□□□ -0.51
HMGN1-215	ENST00000485550	MBOAT7	Q96N66	472 aa		11.87	□□□□□ -0.51
HMGN1-215	ENST00000485550	CASD1	Q96PB1	797 aa		11.87	□□□□□ -0.51
HMGN1-215	ENST00000485550	PHF20	Q9BVI0	1012 aa		11.87	□□□□□ -0.51
HMGN1-215	ENST00000485550	ELAC1	Q9H777	363 aa	Known RBP	11.87	□□□□□ -0.51
HMGN1-215	ENST00000485550	RNF19A	Q9NV58	838 aa		11.87	□□□□□ -0.51
HMGN1-215	ENST00000485550	DOCK6	Q96HP0	2047 aa		11.87	□□□□□ -0.51
HMGN1-215	ENST00000485550		A0A087WZ62	844 aa		11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	MARCH6	O60337	910 aa		11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	PFKFB2	O60825	505 aa		11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	CLASP2	O75122	1294 aa	Known RBP	11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	CDKL5	O76039	1030 aa		11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	DNM2	P50570	870 aa		11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	NPEPPS	P55786	919 aa		11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	KRT17	Q04695	432 aa		11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	PLA2G4F	Q68DD2	849 aa		11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	MOXD1	Q6UVY6	613 aa		11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	PIK3AP1	Q6ZUJ8	805 aa		11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	RHPN2	Q8IUC4	686 aa		11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	KSR1	Q8IVT5	923 aa		11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	CCDC105	Q8IYK2	499 aa		11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	ZDHHC14	Q8IZN3	488 aa		11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	ABI1	Q8IZP0	508 aa		11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	NECAB1	Q8N987	351 aa		11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	RDM1	Q8NG50	284 aa		11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	ZNF558	Q96NG5	402 aa		11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	CEP89	Q96ST8	783 aa		11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	FDXACB1	Q9BRP7	624 aa	Predicted RBP	11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	NIFK	Q9BYG3	293 aa	Known RBP	11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	TMEM117	Q9H0C3	514 aa		11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	SUCLA2	Q9P2R7	463 aa	Predicted RBP	11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	BOLA1	Q9Y3E2	137 aa		11.86	□□□□□ -0.51
HMGN1-215	ENST00000485550	ACACB	O00763	2458 aa		11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	C2orf71	A6NGG8	1288 aa		11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	CCNT1	O60563	726 aa	Known RBP	11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	CTDNEP1	O95476	244 aa		11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	XBP1	P17861	261 aa		11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	AK2	P54819	239 aa		11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	PSMC5	P62195	406 aa		11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	SMC1A	Q14683	1233 aa	Known RBP	11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	EARS2	Q5JPH6	523 aa	Known RBP	11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	CLLU1OS	Q5K130	101 aa		11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	KIAA1841	Q6NSI8	718 aa		11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	FAM43B	Q6ZT52	329 aa	Predicted RBP	11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	ANO5	Q75V66	913 aa		11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	NEK8	Q86SG6	692 aa		11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	DTWD2	Q8NBA8	298 aa		11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	HELQ	Q8TDG4	1101 aa		11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	CNTNAP3B	Q96NU0	1288 aa		11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	CNTNAP3	Q9BZ76	1288 aa		11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	GCOM2	Q9BZD3	368 aa	Predicted RBP	11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	SPG21	Q9NZD8	308 aa		11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	ORC3	Q9UBD5	711 aa	Predicted RBP	11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	FBXL21	Q9UKT6	434 aa		11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550		R4GN57	208 aa		11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	MAP1B	P46821	2468 aa	Known RBP	11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	KMT2B	Q9UMN6	2715 aa	Predicted RBP	11.85	□□□□□ -0.51
HMGN1-215	ENST00000485550	MTCL1	Q9Y4B5	1905 aa	Known RBP	11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	IGKV6-21	A0A0C4DH24	114 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550		A0A0U1RQF3	1178 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	FAM205C	A6NFA0	338 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	NT5C1B-RDH14	C9J2C7	533 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	HOXA2	O43364	376 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	MAF	O75444	373 aa	Predicted RBP	11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	EOMES	O95936	686 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	LMNA	P02545	664 aa	Known RBP	11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	EPCAM	P16422	314 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	PPM1A	P35813	382 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	QARS	P47897	775 aa	Known RBP	11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	FOSB	P53539	338 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	ATAT1	Q5SQI0	421 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	SIX5	Q8N196	739 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	ZNF710	Q8N1W2	664 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	LRRC43	Q8N309	656 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	MRPL43	Q8N983	215 aa	Known RBP	11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	AUTS2	Q8WXX7	1259 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	RIN2	Q8WYP3	895 aa	Predicted RBP	11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	LPP	Q93052	612 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	NLRP4	Q96MN2	994 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	HINFP	Q9BQA5	517 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	RTP3	Q9BQQ7	232 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	KCNMB3	Q9NPA1	279 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	CYP26B1	Q9NR63	512 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	PPP4R2	Q9NY27	417 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	WRAP73	Q9P2S5	460 aa	Predicted RBP	11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	VAV3	Q9UKW4	847 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	FRYL	O94915	3013 aa		11.84	□□□□□ -0.51
HMGN1-215	ENST00000485550	STK25	O00506	426 aa		11.83	□□□□□ -0.52
HMGN1-215	ENST00000485550	ZBTB39	O15060	712 aa		11.83	□□□□□ -0.52
HMGN1-215	ENST00000485550	LARGE1	O95461	756 aa		11.83	□□□□□ -0.52
HMGN1-215	ENST00000485550	FDPS	P14324	419 aa	Known RBP	11.83	□□□□□ -0.52
HMGN1-215	ENST00000485550	NR5A1	Q13285	461 aa		11.83	□□□□□ -0.52
HMGN1-215	ENST00000485550	PPP2R5C	Q13362	524 aa		11.83	□□□□□ -0.52
HMGN1-215	ENST00000485550	CTTN	Q14247	550 aa	Known RBP	11.83	□□□□□ -0.52
HMGN1-215	ENST00000485550	PUM1	Q14671	1186 aa	Known RBP eCLIP	11.83	□□□□□ -0.52	3e-25	■□□□□ 8.5
HMGN1-215	ENST00000485550	ME3	Q16798	604 aa		11.83	□□□□□ -0.52
HMGN1-215	ENST00000485550	TWF2	Q6IBS0	349 aa	Known RBP	11.83	□□□□□ -0.52

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