RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 TOR2AQ5JU69 321 aa8.1□□□□□ -1.11
USP40-213ENST00000483216 POLNQ7Z5Q5 900 aa8.1□□□□□ -1.11
USP40-213ENST00000483216 CMTM4Q8IZR5 234 aa8.1□□□□□ -1.11
USP40-213ENST00000483216 CHST13Q8NET6 341 aa8.1□□□□□ -1.11
USP40-213ENST00000483216 IFT122Q9HBG6 1241 aa8.1□□□□□ -1.11
USP40-213ENST00000483216 IL23AQ9NPF7 189 aa8.1□□□□□ -1.11
USP40-213ENST00000483216 DNAJC28Q9NX36 388 aa8.1□□□□□ -1.11
USP40-213ENST00000483216 ING3Q9NXR8 418 aa8.1□□□□□ -1.11
USP40-213ENST00000483216 TRHDEQ9UKU6 1024 aa8.1□□□□□ -1.11
USP40-213ENST00000483216 CDK17Q00537 523 aa8.09□□□□□ -1.11
USP40-213ENST00000483216 ITKQ08881 620 aa8.09□□□□□ -1.11
USP40-213ENST00000483216 UBE3CQ15386 1083 aa8.09□□□□□ -1.11
USP40-213ENST00000483216 C19orf54Q5BKX5 351 aa8.09□□□□□ -1.11
USP40-213ENST00000483216 MSL3Q8N5Y2 521 aaKnown RBP8.09□□□□□ -1.11
USP40-213ENST00000483216 WWC2-AS2Q96NR7 200 aa8.09□□□□□ -1.11
USP40-213ENST00000483216 ST6GALNAC2Q9UJ37 374 aa8.09□□□□□ -1.11
USP40-213ENST00000483216 PRRG2O14669 202 aa8.08□□□□□ -1.12
USP40-213ENST00000483216 NRP1O14786 923 aa8.08□□□□□ -1.12
USP40-213ENST00000483216 TMEM127O75204 238 aa8.08□□□□□ -1.12
USP40-213ENST00000483216 KATNA1O75449 491 aa8.08□□□□□ -1.12
USP40-213ENST00000483216 AMOTL1Q8IY63 956 aa8.08□□□□□ -1.12
USP40-213ENST00000483216 RPUSD2Q8IZ73 545 aaKnown RBP8.08□□□□□ -1.12
USP40-213ENST00000483216 SSH1Q8WYL5 1049 aa8.08□□□□□ -1.12
USP40-213ENST00000483216 FATE1Q969F0 183 aa8.08□□□□□ -1.12
USP40-213ENST00000483216 C8orf49Q96NF6 230 aa8.08□□□□□ -1.12
USP40-213ENST00000483216 HOMER2Q9NSB8 354 aa8.08□□□□□ -1.12
USP40-213ENST00000483216 RCAN3Q9UKA8 241 aa8.08□□□□□ -1.12
USP40-213ENST00000483216 JAG2Q9Y219 1238 aa8.08□□□□□ -1.12
USP40-213ENST00000483216 NCANO14594 1321 aa8.07□□□□□ -1.12
USP40-213ENST00000483216 hCG_2014768A0A024R1R8 64 aa8.07□□□□□ -1.12
USP40-213ENST00000483216 UBE2QL1A1L167 161 aa8.07□□□□□ -1.12
USP40-213ENST00000483216 CFBP00751 764 aa8.07□□□□□ -1.12
USP40-213ENST00000483216 COMTP21964 271 aa8.07□□□□□ -1.12
USP40-213ENST00000483216 SLC5A3P53794 718 aa8.07□□□□□ -1.12
USP40-213ENST00000483216 FOXL1Q12952 345 aa8.07□□□□□ -1.12
USP40-213ENST00000483216 ADRM1Q16186 407 aa8.07□□□□□ -1.12
USP40-213ENST00000483216 BTNL9Q6UXG8 535 aa8.07□□□□□ -1.12
USP40-213ENST00000483216 C1orf162Q8NEQ5 155 aaPredicted RBP8.07□□□□□ -1.12
USP40-213ENST00000483216 SNX33Q8WV41 574 aa8.07□□□□□ -1.12
USP40-213ENST00000483216 MTMR8Q96EF0 704 aa8.07□□□□□ -1.12
USP40-213ENST00000483216 MPHOSPH9Q99550 1183 aa8.07□□□□□ -1.12
USP40-213ENST00000483216 TCF25Q9BQ70 676 aa8.07□□□□□ -1.12
USP40-213ENST00000483216 C1QTNF3Q9BXJ4 246 aa8.07□□□□□ -1.12
USP40-213ENST00000483216 CCDC8Q9H0W5 538 aaPredicted RBP8.07□□□□□ -1.12
USP40-213ENST00000483216 DEF6Q9H4E7 631 aa8.07□□□□□ -1.12
USP40-213ENST00000483216 ZNF277Q9NRM2 450 aaPredicted RBP8.07□□□□□ -1.12
USP40-213ENST00000483216 GABRDO14764 452 aa8.06□□□□□ -1.12
USP40-213ENST00000483216 AGXTP21549 392 aa8.06□□□□□ -1.12
USP40-213ENST00000483216 CTSSP25774 331 aa8.06□□□□□ -1.12
USP40-213ENST00000483216 MSX2P35548 267 aaPredicted RBP8.06□□□□□ -1.12
USP40-213ENST00000483216 IARSP41252 1262 aaKnown RBP8.06□□□□□ -1.12
USP40-213ENST00000483216 NPEPPSP55786 919 aa8.06□□□□□ -1.12
USP40-213ENST00000483216 ANAPC15P60006 121 aa8.06□□□□□ -1.12
USP40-213ENST00000483216 HS1BP3Q53T59 392 aa8.06□□□□□ -1.12
USP40-213ENST00000483216 FAM111BQ6SJ93 734 aa8.06□□□□□ -1.12
USP40-213ENST00000483216 ABHD15Q6UXT9 468 aa8.06□□□□□ -1.12
USP40-213ENST00000483216 Q6ZSN1 163 aa8.06□□□□□ -1.12
USP40-213ENST00000483216 PRRT2Q7Z6L0 340 aaPredicted RBP8.06□□□□□ -1.12
USP40-213ENST00000483216 GLB1L3Q8NCI6 653 aaPredicted RBP8.06□□□□□ -1.12
USP40-213ENST00000483216 EDAQ92838 391 aa8.06□□□□□ -1.12
USP40-213ENST00000483216 ACE2Q9BYF1 805 aaPredicted RBP8.06□□□□□ -1.12
USP40-213ENST00000483216 KRTAP3-1Q9BYR8 98 aa8.06□□□□□ -1.12
USP40-213ENST00000483216 ENKD1Q9H0I2 346 aa8.06□□□□□ -1.12
USP40-213ENST00000483216 SCOCQ9UIL1 159 aa8.06□□□□□ -1.12
USP40-213ENST00000483216 TCAF1Q9Y4C2 921 aa8.06□□□□□ -1.12
USP40-213ENST00000483216 GPR45Q9Y5Y3 372 aa8.06□□□□□ -1.12
USP40-213ENST00000483216 RBP3P10745 1247 aa8.05□□□□□ -1.12
USP40-213ENST00000483216 SELENOPP49908 381 aa8.05□□□□□ -1.12
USP40-213ENST00000483216 KRT85P78386 507 aa8.05□□□□□ -1.12
USP40-213ENST00000483216 ADAM17P78536 824 aa8.05□□□□□ -1.12
USP40-213ENST00000483216 MBNL2Q5VZF2 373 aaKnown RBP8.05□□□□□ -1.12
USP40-213ENST00000483216 PGM2L1Q6PCE3 622 aa8.05□□□□□ -1.12
USP40-213ENST00000483216 MAMDC4Q6UXC1 1216 aa8.05□□□□□ -1.12
USP40-213ENST00000483216 DVL3Q92997 716 aaPredicted RBP8.05□□□□□ -1.12
USP40-213ENST00000483216 TMEM176AQ96HP8 235 aa8.05□□□□□ -1.12
USP40-213ENST00000483216 FAXDC2Q96IV6 333 aa8.05□□□□□ -1.12
USP40-213ENST00000483216 KLC2Q9H0B6 622 aa8.05□□□□□ -1.12
USP40-213ENST00000483216 NCDNQ9UBB6 729 aa8.05□□□□□ -1.12
USP40-213ENST00000483216 RPTORQ8N122 1335 aa8.04□□□□□ -1.12
USP40-213ENST00000483216 SHTN1A0MZ66 631 aa8.04□□□□□ -1.12
USP40-213ENST00000483216 PRAMEF4O60810 478 aa8.04□□□□□ -1.12
USP40-213ENST00000483216 PHF2O75151 1096 aa8.04□□□□□ -1.12
USP40-213ENST00000483216 OSMP13725 252 aa8.04□□□□□ -1.12
USP40-213ENST00000483216 GYPEP15421 78 aa8.04□□□□□ -1.12
USP40-213ENST00000483216 IGBP1P78318 339 aa8.04□□□□□ -1.12
USP40-213ENST00000483216 BRDTQ58F21 947 aaPredicted RBP8.04□□□□□ -1.12
USP40-213ENST00000483216 MUM1L1Q5H9M0 696 aa8.04□□□□□ -1.12
USP40-213ENST00000483216 GJC2Q5T442 439 aaPredicted RBP8.04□□□□□ -1.12
USP40-213ENST00000483216 GPR156Q8NFN8 814 aa8.04□□□□□ -1.12
USP40-213ENST00000483216 RIN2Q8WYP3 895 aaPredicted RBP8.04□□□□□ -1.12
USP40-213ENST00000483216 FAM89AQ96GI7 184 aa8.04□□□□□ -1.12
USP40-213ENST00000483216 ASPSCR1Q9BZE9 553 aa8.04□□□□□ -1.12
USP40-213ENST00000483216 GREM2Q9H772 168 aa8.04□□□□□ -1.12
USP40-213ENST00000483216 TLR9Q9NR96 1032 aa8.04□□□□□ -1.12
USP40-213ENST00000483216 TYW1Q9NV66 732 aaKnown RBP8.04□□□□□ -1.12
USP40-213ENST00000483216 MKS1Q9NXB0 559 aa8.04□□□□□ -1.12
USP40-213ENST00000483216 SPEF1Q9Y4P9 236 aa8.04□□□□□ -1.12
USP40-213ENST00000483216 FZD9O00144 591 aa8.03□□□□□ -1.12
USP40-213ENST00000483216 MT-CO1P00395 513 aa8.03□□□□□ -1.12
USP40-213ENST00000483216 MYBL2P10244 700 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms