RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 BORCS6Q96GS4 357 aa9.05□□□□□ -0.96
USP4-210ENST00000483212 ZNF668Q96K58 619 aaPredicted RBP9.05□□□□□ -0.96
USP4-210ENST00000483212 NLRP4Q96MN2 994 aa9.05□□□□□ -0.96
USP4-210ENST00000483212 DEFB118Q96PH6 123 aa9.05□□□□□ -0.96
USP4-210ENST00000483212 TSG101Q99816 390 aa9.05□□□□□ -0.96
USP4-210ENST00000483212 FDXACB1Q9BRP7 624 aaPredicted RBP9.05□□□□□ -0.96
USP4-210ENST00000483212 RNF208Q9H0X6 261 aa9.05□□□□□ -0.96
USP4-210ENST00000483212 C2orf40Q9H1Z8 148 aa9.05□□□□□ -0.96
USP4-210ENST00000483212 MINDY3Q9H8M7 445 aa9.05□□□□□ -0.96
USP4-210ENST00000483212 INTS13Q9NVM9 706 aa9.05□□□□□ -0.96
USP4-210ENST00000483212 STYXL1Q9Y6J8 313 aa9.05□□□□□ -0.96
USP4-210ENST00000483212 KCNJ18B7U540 433 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 K7ERI5 159 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 CLIC2O15247 247 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 AKAP3O75969 853 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 SRGAP2CP0DJJ0 459 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 NR2F2P24468 414 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 EEF1GP26641 437 aaKnown RBP9.04□□□□□ -0.96
USP4-210ENST00000483212 CASP4P49662 377 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 ZNF75DP51815 510 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 EFNA5P52803 228 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 TPM4P67936 248 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 MGAT3Q09327 533 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 KCNJ12Q14500 433 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 KRT31Q15323 416 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 FAM187BQ17R55 369 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 TCP11X2Q5H9J9 407 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 TAF2Q6P1X5 1199 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 ZPBP2Q6X784 338 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 GOLGA5Q8TBA6 731 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 DNAJB3Q8WWF6 145 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 DHX38Q92620 1227 aaKnown RBP9.04□□□□□ -0.96
USP4-210ENST00000483212 EEF2KMTQ96G04 330 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 PDLIM2Q96JY6 352 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 CNOT6LQ96LI5 555 aaKnown RBP9.04□□□□□ -0.96
USP4-210ENST00000483212 GLT1D1Q96MS3 346 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 NAP1L5Q96NT1 182 aaPredicted RBP9.04□□□□□ -0.96
USP4-210ENST00000483212 MAP7D2Q96T17 732 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 CBWD1Q9BRT8 395 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 HAPLN2Q9GZV7 340 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 FAM49AQ9H0Q0 323 aaPredicted RBP9.04□□□□□ -0.96
USP4-210ENST00000483212 CDHR5Q9HBB8 845 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 CGNQ9P2M7 1197 aaKnown RBP9.04□□□□□ -0.96
USP4-210ENST00000483212 EXOC7Q9UPT5 735 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 AKT3Q9Y243 479 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 USP20Q9Y2K6 914 aa9.04□□□□□ -0.96
USP4-210ENST00000483212 FARP1Q9Y4F1 1045 aaPredicted RBP9.04□□□□□ -0.96
USP4-210ENST00000483212 A0A1B0GTH6 734 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 KBTBD13C9JR72 458 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 ACKR2O00590 384 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 CETN3O15182 167 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 SLC16A3O15427 465 aaKnown RBP9.03□□□□□ -0.96
USP4-210ENST00000483212 B4GALT5O43286 388 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 SGPL1O95470 568 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 ADCY5O95622 1261 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 MYCP01106 439 aaPredicted RBP9.03□□□□□ -0.96
USP4-210ENST00000483212 PRKCBP05771 671 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 GARTP22102 1010 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 PROZP22891 400 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 PHKA2P46019 1235 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 CDK7P50613 346 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 NLRP11P59045 1033 aaKnown RBP9.03□□□□□ -0.96
USP4-210ENST00000483212 SPAG1Q07617 926 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 STRN3Q13033 797 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 ADAM9Q13443 819 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 TPD52L1Q16890 204 aaPredicted RBP9.03□□□□□ -0.96
USP4-210ENST00000483212 KIZQ2M2Z5 673 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 MIIPQ5JXC2 388 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 HS2ST1Q7LGA3 356 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 SRGAP1Q7Z6B7 1085 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 ZBTB8OSQ8IWT0 167 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 SYCP3Q8IZU3 236 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 NME8Q8N427 588 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 ZSWIM2Q8NEG5 633 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 U2AF1L4Q8WU68 220 aaKnown RBP9.03□□□□□ -0.96
USP4-210ENST00000483212 TMEM40Q8WWA1 233 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 MRFAP1L1Q96HT8 127 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 FBXL18Q96ME1 805 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 PPP1R16BQ96T49 567 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 MKNK1Q9BUB5 465 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 TARS2Q9BW92 718 aaKnown RBP9.03□□□□□ -0.96
USP4-210ENST00000483212 XPO4Q9C0E2 1151 aaKnown RBP9.03□□□□□ -0.96
USP4-210ENST00000483212 PTPRHQ9HD43 1115 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 IFNKQ9P0W0 207 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 EVPLQ92817 2033 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 CNTNAP2Q9UHC6 1331 aa9.03□□□□□ -0.96
USP4-210ENST00000483212 A0A0B4J269 797 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 A0A0U1RQG5 324 aaPredicted RBP9.02□□□□□ -0.97
USP4-210ENST00000483212 RBAK-RBAKDNI3L0D1 243 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 INO80B-WBP1J3KQ70 363 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 ARVCFO00192 962 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 HNRNPDLO14979 420 aaKnown RBP9.02□□□□□ -0.97
USP4-210ENST00000483212 FAM189A1O60320 539 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 TSPAN1O60635 241 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 FGFR1OPO95684 399 aaKnown RBP9.02□□□□□ -0.97
USP4-210ENST00000483212 COL6A1P12109 1028 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 DARSP14868 501 aaKnown RBP9.02□□□□□ -0.97
USP4-210ENST00000483212 RPL13P26373 211 aaKnown RBP9.02□□□□□ -0.97
USP4-210ENST00000483212 PBX1P40424 430 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 GJA8P48165 433 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms