RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 CDK5RAP3Q96JB5 506 aa13.52□□□□□ -0.25
PTPRF-213ENST00000481019 TRAIPQ9BWF2 469 aa13.52□□□□□ -0.25
PTPRF-213ENST00000481019 PANK2Q9BZ23 570 aa13.52□□□□□ -0.25
PTPRF-213ENST00000481019 NT5C3AQ9H0P0 336 aa13.52□□□□□ -0.25
PTPRF-213ENST00000481019 RNF39Q9H2S5 420 aa13.52□□□□□ -0.25
PTPRF-213ENST00000481019 FZD8Q9H461 694 aa13.52□□□□□ -0.25
PTPRF-213ENST00000481019 CWH43Q9H720 699 aa13.52□□□□□ -0.25
PTPRF-213ENST00000481019 ELAC1Q9H777 363 aaKnown RBP13.52□□□□□ -0.25
PTPRF-213ENST00000481019 FAM105AQ9NUU6 356 aa13.52□□□□□ -0.25
PTPRF-213ENST00000481019 MTCH2Q9Y6C9 303 aa13.52□□□□□ -0.25
PTPRF-213ENST00000481019 RALGAPA2Q2PPJ7 1873 aa13.52□□□□□ -0.25
PTPRF-213ENST00000481019 PRRC2BQ5JSZ5 2229 aaKnown RBP13.51□□□□□ -0.25
PTPRF-213ENST00000481019 SLC26A4O43511 780 aa13.51□□□□□ -0.25
PTPRF-213ENST00000481019 B4GALT3O60512 393 aa13.51□□□□□ -0.25
PTPRF-213ENST00000481019 YEATS4O95619 227 aa13.51□□□□□ -0.25
PTPRF-213ENST00000481019 LIG1P18858 919 aa13.51□□□□□ -0.25
PTPRF-213ENST00000481019 IGFBP4P22692 258 aa13.51□□□□□ -0.25
PTPRF-213ENST00000481019 GUCY2CP25092 1073 aa13.51□□□□□ -0.25
PTPRF-213ENST00000481019 NAMPTP43490 491 aa13.51□□□□□ -0.25
PTPRF-213ENST00000481019 NPTX2P47972 431 aa13.51□□□□□ -0.25
PTPRF-213ENST00000481019 PEX3P56589 373 aa13.51□□□□□ -0.25
PTPRF-213ENST00000481019 NT5DC1Q5TFE4 455 aa13.51□□□□□ -0.25
PTPRF-213ENST00000481019 EEF1DP3Q658K8 133 aa13.51□□□□□ -0.25
PTPRF-213ENST00000481019 SHC4Q6S5L8 630 aa13.51□□□□□ -0.25
PTPRF-213ENST00000481019 AGMOQ6ZNB7 445 aa13.51□□□□□ -0.25
PTPRF-213ENST00000481019 GPBP1Q86WP2 473 aa13.51□□□□□ -0.25
PTPRF-213ENST00000481019 FBXO22Q8NEZ5 403 aa13.51□□□□□ -0.25
PTPRF-213ENST00000481019 HELQQ8TDG4 1101 aa13.51□□□□□ -0.25
PTPRF-213ENST00000481019 KIFAP3Q92845 792 aa13.51□□□□□ -0.25
PTPRF-213ENST00000481019 CALML4Q96GE6 196 aa13.51□□□□□ -0.25
PTPRF-213ENST00000481019 REEP2Q9BRK0 252 aa13.51□□□□□ -0.25
PTPRF-213ENST00000481019 TYW1Q9NV66 732 aaKnown RBP13.51□□□□□ -0.25
PTPRF-213ENST00000481019 HES2Q9Y543 173 aa13.51□□□□□ -0.25
PTPRF-213ENST00000481019 PCDHB2Q9Y5E7 798 aa13.51□□□□□ -0.25
PTPRF-213ENST00000481019 PPP6R2O75170 966 aa13.5□□□□□ -0.25
PTPRF-213ENST00000481019 ERLIN2O94905 339 aa13.5□□□□□ -0.25
PTPRF-213ENST00000481019 PRKCBP05771 671 aa13.5□□□□□ -0.25
PTPRF-213ENST00000481019 DNAJB1P25685 340 aa13.5□□□□□ -0.25
PTPRF-213ENST00000481019 CTNNB1P35222 781 aa13.5□□□□□ -0.25
PTPRF-213ENST00000481019 BMPR1AP36894 532 aa13.5□□□□□ -0.25
PTPRF-213ENST00000481019 PBX3P40426 434 aa13.5□□□□□ -0.25
PTPRF-213ENST00000481019 GIT2Q14161 759 aa13.5□□□□□ -0.25
PTPRF-213ENST00000481019 CCDC85BQ15834 202 aaPredicted RBP13.5□□□□□ -0.25
PTPRF-213ENST00000481019 PPP4R3CPQ6ZMV5 832 aa13.5□□□□□ -0.25
PTPRF-213ENST00000481019 MRPL10Q7Z7H8 261 aaKnown RBP13.5□□□□□ -0.25
PTPRF-213ENST00000481019 MAFAQ8NHW3 353 aaPredicted RBP13.5□□□□□ -0.25
PTPRF-213ENST00000481019 DEPTORQ8TB45 409 aa13.5□□□□□ -0.25
PTPRF-213ENST00000481019 PPM1EQ8WY54 764 aa13.5□□□□□ -0.25
PTPRF-213ENST00000481019 GAS2L1Q99501 681 aaPredicted RBP13.5□□□□□ -0.25
PTPRF-213ENST00000481019 CXCL16Q9H2A7 254 aa13.5□□□□□ -0.25
PTPRF-213ENST00000481019 PDZD7Q9H5P4 517 aa13.5□□□□□ -0.25
PTPRF-213ENST00000481019 PRDM6Q9NQX0 595 aa13.5□□□□□ -0.25
PTPRF-213ENST00000481019 DACT1Q9NYF0 836 aa13.5□□□□□ -0.25
PTPRF-213ENST00000481019 PCDHA7Q9UN72 937 aa13.5□□□□□ -0.25
PTPRF-213ENST00000481019 A0A0C4DFX4 3053 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 PLXNA4Q9HCM2 1894 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 CNTNAP2Q9UHC6 1331 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 GOLGA6L4A6NEF3 574 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 CCDC169A6NNP5 214 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 GRM6O15303 877 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 SLC16A4O15374 487 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 ZNF623O75123 536 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 OFD1O75665 1012 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 NPTXRO95502 500 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 EOMESO95936 686 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 FAM187BQ17R55 369 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 RRAGBQ5VZM2 374 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 FAM43BQ6ZT52 329 aaPredicted RBP13.49□□□□□ -0.25
PTPRF-213ENST00000481019 ZBTB8OSQ8IWT0 167 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 MICALL1Q8N3F8 863 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 KCTD17Q8N5Z5 321 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 PDILTQ8N807 584 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 RASSF8Q8NHQ8 419 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 LARP4BQ92615 738 aaKnown RBP13.49□□□□□ -0.25
PTPRF-213ENST00000481019 IFT74Q96LB3 600 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 TMEM117Q9H0C3 514 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 NXF3Q9H4D5 531 aaKnown RBP13.49□□□□□ -0.25
PTPRF-213ENST00000481019 ALG13Q9NP73 1137 aaKnown RBP13.49□□□□□ -0.25
PTPRF-213ENST00000481019 ARHGAP28Q9P2N2 729 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 RCOR1Q9UKL0 485 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 IPPQ9Y573 584 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 MYH11P35749 1972 aa13.49□□□□□ -0.25
PTPRF-213ENST00000481019 MYO7AQ13402 2215 aa13.48□□□□□ -0.25
PTPRF-213ENST00000481019 A0A1B0GUA9 196 aa13.48□□□□□ -0.25
PTPRF-213ENST00000481019 MYMKA6NI61 221 aa13.48□□□□□ -0.25
PTPRF-213ENST00000481019 C5orf67F2Z3F1 127 aa13.48□□□□□ -0.25
PTPRF-213ENST00000481019 H3BNC9 293 aa13.48□□□□□ -0.25
PTPRF-213ENST00000481019 CUTAO60888 179 aa13.48□□□□□ -0.25
PTPRF-213ENST00000481019 CSPG5O95196 566 aa13.48□□□□□ -0.25
PTPRF-213ENST00000481019 MBD3O95983 291 aa13.48□□□□□ -0.25
PTPRF-213ENST00000481019 PLS3P13797 630 aa13.48□□□□□ -0.25
PTPRF-213ENST00000481019 POU3F3P20264 500 aaPredicted RBP13.48□□□□□ -0.25
PTPRF-213ENST00000481019 AXLP30530 894 aa13.48□□□□□ -0.25
PTPRF-213ENST00000481019 GPM6BQ13491 265 aa13.48□□□□□ -0.25
PTPRF-213ENST00000481019 CAMK1Q14012 370 aa13.48□□□□□ -0.25
PTPRF-213ENST00000481019 PPP2R5AQ15172 486 aa13.48□□□□□ -0.25
PTPRF-213ENST00000481019 E2F4Q16254 413 aa13.48□□□□□ -0.25
PTPRF-213ENST00000481019 NOTUMQ6P988 496 aa13.48□□□□□ -0.25
PTPRF-213ENST00000481019 COLGALT1Q8NBJ5 622 aa13.48□□□□□ -0.25
PTPRF-213ENST00000481019 TMEM87AQ8NBN3 555 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms