RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 NSUN6Q8TEA1 469 aaKnown RBP13.24□□□□□ -0.29
PTPRF-212ENST00000477970 ATP6V0A1Q93050 837 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 ZCCHC17Q9NP64 241 aaKnown RBP13.24□□□□□ -0.29
PTPRF-212ENST00000477970 PICK1Q9NRD5 415 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 EMSYQ7Z589 1322 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 NR3C2P08235 984 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 SMTNP53814 917 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 GALCP54803 685 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 SH3D19Q5HYK7 790 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 SAMD1Q6SPF0 538 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-212ENST00000477970 NT5DC3Q86UY8 548 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 HDAC7Q8WUI4 952 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 MS4A14Q96JA4 679 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 CCDC43Q96MW1 224 aaKnown RBP13.24□□□□□ -0.29
PTPRF-212ENST00000477970 TBX20Q9UMR3 447 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 CCDC66A2RUB6 948 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 ANKRD62A6NC57 917 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 H0YCG3 227 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 BAATQ14032 418 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-212ENST00000477970 CATSPERGQ6ZRH7 1159 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 SAMD7Q7Z3H4 446 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 U2AF1L4Q8WU68 220 aaKnown RBP13.24□□□□□ -0.29
PTPRF-212ENST00000477970 SH3GL2Q99962 352 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 RNF216Q9NWF9 866 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-212ENST00000477970 CLEC11AQ9Y240 323 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 SSC5DA1L4H1 1573 aa13.24□□□□□ -0.29
PTPRF-212ENST00000477970 MYCLP12524 364 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-212ENST00000477970 TNNT3P45378 269 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-212ENST00000477970 PPP3CAQ08209 521 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 DGKZQ13574 1117 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 TAF3Q5VWG9 929 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 ANO5Q75V66 913 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 RHOT2Q8IXI1 618 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.23□□□□□ -0.29
PTPRF-212ENST00000477970 CBWD1Q9BRT8 395 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 ISCUQ9H1K1 167 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 HOMER2Q9NSB8 354 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 PKD2L1Q9P0L9 805 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 A0A0U1RQG5 324 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-212ENST00000477970 RPS6KA5O75582 802 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 PSAPP07602 524 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 DMP1Q13316 513 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-212ENST00000477970 MCPH1Q8NEM0 835 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 HHIPL1Q96JK4 782 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 MFSD14AQ96MC6 490 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 AGPAT1Q99943 283 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 EHD2Q9NZN4 543 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 RIPK3Q9Y572 518 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 LRRC37A2A6NM11 1700 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 PTPRFP10586 1907 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 AGPSO00116 658 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 PGRMC1O00264 195 aaKnown RBP13.23□□□□□ -0.29
PTPRF-212ENST00000477970 MTA2O94776 668 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 ICAM3P32942 547 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 PAK2Q13177 524 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 ENOX2Q16206 610 aaKnown RBP13.23□□□□□ -0.29
PTPRF-212ENST00000477970 TBC1D10BQ4KMP7 808 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-212ENST00000477970 XKR9Q5GH70 373 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 FAM81BQ96LP2 452 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 PSMB7Q99436 277 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 TEX13BQ9BXU2 312 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 ACAD9Q9H845 621 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 VPS18Q9P253 973 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 FAN1Q9Y2M0 1017 aa13.23□□□□□ -0.29
PTPRF-212ENST00000477970 IGSF9BQ9UPX0 1349 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 SPATA31C2B4DYI2 1134 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 DGAT1O75907 488 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 GARTP22102 1010 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 NOP2P46087 812 aaKnown RBP13.22□□□□□ -0.29
PTPRF-212ENST00000477970 NPTX2P47972 431 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 PEX3P56589 373 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 DLG4P78352 724 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 SMYD5Q6GMV2 418 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 SNRNP48Q6IEG0 339 aaKnown RBP13.22□□□□□ -0.29
PTPRF-212ENST00000477970 PEX26Q7Z412 305 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 USP37Q86T82 979 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 DNAJC5GQ8N7S2 189 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 WHAMMQ8TF30 809 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 CTNNBL1Q8WYA6 563 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-212ENST00000477970 CCDC102AQ96A19 550 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 KLRG1Q96E93 195 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 CYP39A1Q9NYL5 469 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 SMARCAL1Q9NZC9 954 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 TESPA1A2RU30 521 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-212ENST00000477970 TMEM88BA6NKF7 163 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 KCNK3O14649 394 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 TNFAIP3P21580 790 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 GPC3P51654 580 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 MAP1SQ66K74 1059 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-212ENST00000477970 C11orf63Q6NUN7 778 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 NSMFQ6X4W1 530 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 GLYCTKQ8IVS8 523 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 C1orf131Q8NDD1 294 aaKnown RBP13.22□□□□□ -0.29
PTPRF-212ENST00000477970 PLEKHO2Q8TD55 490 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 DCPSQ96C86 337 aaKnown RBP13.22□□□□□ -0.29
PTPRF-212ENST00000477970 WNK4Q96J92 1243 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 WRNIP1Q96S55 665 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 TMEM117Q9H0C3 514 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 SLITRK6Q9H5Y7 841 aa13.22□□□□□ -0.29
PTPRF-212ENST00000477970 TMEM8AQ9HCN3 771 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 94.6 ms