RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 KRT17Q04695 432 aa20.66■□□□□ 0.9
COL7A1-209ENST00000474432 MBTD1Q05BQ5 628 aa20.66■□□□□ 0.9
COL7A1-209ENST00000474432 ORC2Q13416 577 aaPredicted RBP20.66■□□□□ 0.9
COL7A1-209ENST00000474432 NBR1Q14596 966 aa20.66■□□□□ 0.9
COL7A1-209ENST00000474432 TTC38Q5R3I4 469 aa20.66■□□□□ 0.9
COL7A1-209ENST00000474432 POLR3CQ9BUI4 534 aaPredicted RBP20.66■□□□□ 0.9
COL7A1-209ENST00000474432 VN1R3Q9BXE9 311 aa20.66■□□□□ 0.9
COL7A1-209ENST00000474432 EIF2AQ9BY44 585 aaKnown RBP20.66■□□□□ 0.9
COL7A1-209ENST00000474432 NGRNQ9NPE2 291 aaKnown RBP20.66■□□□□ 0.9
COL7A1-209ENST00000474432 GPRC5CQ9NQ84 441 aa20.66■□□□□ 0.9
COL7A1-209ENST00000474432 INPP5FQ9Y2H2 1132 aa20.66■□□□□ 0.9
COL7A1-209ENST00000474432 C2orf71A6NGG8 1288 aa20.65■□□□□ 0.9
COL7A1-209ENST00000474432 GPR37L1O60883 481 aa20.65■□□□□ 0.9
COL7A1-209ENST00000474432 ZC3H11AO75152 810 aaKnown RBP eCLIP20.65■□□□□ 0.9
COL7A1-209ENST00000474432 DDHD2O94830 711 aa20.65■□□□□ 0.9
COL7A1-209ENST00000474432 CD2BP2O95400 341 aaKnown RBP20.65■□□□□ 0.9
COL7A1-209ENST00000474432 OR52Z1P0C646 297 aa20.65■□□□□ 0.9
COL7A1-209ENST00000474432 NCLP19338 710 aaKnown RBP20.65■□□□□ 0.9
COL7A1-209ENST00000474432 MRPL43Q8N983 215 aaKnown RBP20.65■□□□□ 0.9
COL7A1-209ENST00000474432 PGBD4Q96DM1 585 aa20.65■□□□□ 0.9
COL7A1-209ENST00000474432 NFKBIZQ9BYH8 718 aa20.65■□□□□ 0.9
COL7A1-209ENST00000474432 S1PR5Q9H228 398 aa20.65■□□□□ 0.9
COL7A1-209ENST00000474432 RNF39Q9H2S5 420 aa20.65■□□□□ 0.9
COL7A1-209ENST00000474432 ENTPD7Q9NQZ7 604 aa20.65■□□□□ 0.9
COL7A1-209ENST00000474432 DBR1Q9UK59 544 aaKnown RBP20.65■□□□□ 0.9
COL7A1-209ENST00000474432 USP15Q9Y4E8 981 aaPredicted RBP20.65■□□□□ 0.9
COL7A1-209ENST00000474432 FAM86C2PA6NEL3 165 aa20.64■□□□□ 0.89
COL7A1-209ENST00000474432 USO1O60763 962 aaKnown RBP20.64■□□□□ 0.89
COL7A1-209ENST00000474432 RPA1P27694 616 aa20.64■□□□□ 0.89
COL7A1-209ENST00000474432 SLC11A1P49279 550 aa20.64■□□□□ 0.89
COL7A1-209ENST00000474432 ALDH7A1P49419 539 aaKnown RBP20.64■□□□□ 0.89
COL7A1-209ENST00000474432 RABEP1Q15276 862 aa20.64■□□□□ 0.89
COL7A1-209ENST00000474432 PCBP1Q15365 356 aaKnown RBP eCLIP20.64■□□□□ 0.89
COL7A1-209ENST00000474432 ECM1Q16610 540 aa20.64■□□□□ 0.89
COL7A1-209ENST00000474432 SYCE2Q6PIF2 218 aa20.64■□□□□ 0.89
COL7A1-209ENST00000474432 POTEGQ6S5H5 508 aa20.64■□□□□ 0.89
COL7A1-209ENST00000474432 TMC7Q7Z402 723 aa20.64■□□□□ 0.89
COL7A1-209ENST00000474432 FAM184AQ8NB25 1140 aa20.64■□□□□ 0.89
COL7A1-209ENST00000474432 SUSD6Q92537 303 aa20.64■□□□□ 0.89
COL7A1-209ENST00000474432 IGSF21Q96ID5 467 aa20.64■□□□□ 0.89
COL7A1-209ENST00000474432 CPB2Q96IY4 423 aa20.64■□□□□ 0.89
COL7A1-209ENST00000474432 POLR3FQ9H1D9 316 aaPredicted RBP20.64■□□□□ 0.89
COL7A1-209ENST00000474432 RSAD1Q9HA92 442 aa20.64■□□□□ 0.89
COL7A1-209ENST00000474432 INO80B-WBP1J3KQ70 363 aa20.63■□□□□ 0.89
COL7A1-209ENST00000474432 INPPL1O15357 1258 aa20.63■□□□□ 0.89
COL7A1-209ENST00000474432 B4GALT5O43286 388 aa20.63■□□□□ 0.89
COL7A1-209ENST00000474432 ARF4P18085 180 aaPredicted RBP20.63■□□□□ 0.89
COL7A1-209ENST00000474432 TRAPPC10P48553 1259 aa20.63■□□□□ 0.89
COL7A1-209ENST00000474432 TFDP1Q14186 410 aa20.63■□□□□ 0.89
COL7A1-209ENST00000474432 ZBP1Q9H171 429 aa20.63■□□□□ 0.89
COL7A1-209ENST00000474432 HES2Q9Y543 173 aa20.63■□□□□ 0.89
COL7A1-209ENST00000474432 IPPQ9Y573 584 aa20.63■□□□□ 0.89
COL7A1-209ENST00000474432 CNTNAP2Q9UHC6 1331 aa20.62■□□□□ 0.89
COL7A1-209ENST00000474432 ERLIN2O94905 339 aa20.62■□□□□ 0.89
COL7A1-209ENST00000474432 AXLP30530 894 aa20.62■□□□□ 0.89
COL7A1-209ENST00000474432 FXR2P51116 673 aaKnown RBP eCLIP20.62■□□□□ 0.89
COL7A1-209ENST00000474432 SMC1AQ14683 1233 aaKnown RBP20.62■□□□□ 0.89
COL7A1-209ENST00000474432 TMEM31Q5JXX7 168 aa20.62■□□□□ 0.89
COL7A1-209ENST00000474432 ANKRD54Q6NXT1 300 aa20.62■□□□□ 0.89
COL7A1-209ENST00000474432 MAEAQ7L5Y9 396 aa20.62■□□□□ 0.89
COL7A1-209ENST00000474432 DDX53Q86TM3 631 aaKnown RBP20.62■□□□□ 0.89
COL7A1-209ENST00000474432 VPS52Q8N1B4 723 aa20.62■□□□□ 0.89
COL7A1-209ENST00000474432 AUTS2Q8WXX7 1259 aa20.62■□□□□ 0.89
COL7A1-209ENST00000474432 BSNDQ8WZ55 320 aa20.62■□□□□ 0.89
COL7A1-209ENST00000474432 TMEM169Q96HH4 297 aa20.62■□□□□ 0.89
COL7A1-209ENST00000474432 NACC1Q96RE7 527 aa20.62■□□□□ 0.89
COL7A1-209ENST00000474432 CSRNP2Q9H175 543 aa20.62■□□□□ 0.89
COL7A1-209ENST00000474432 MIOSQ9NXC5 875 aa20.62■□□□□ 0.89
COL7A1-209ENST00000474432 PCDHB6Q9Y5E3 794 aa20.62■□□□□ 0.89
COL7A1-209ENST00000474432 FSD2A1L4K1 749 aa20.61■□□□□ 0.89
COL7A1-209ENST00000474432 LOC730098B7Z3J9 87 aa20.61■□□□□ 0.89
COL7A1-209ENST00000474432 CLASP2O75122 1294 aaKnown RBP20.61■□□□□ 0.89
COL7A1-209ENST00000474432 LLGL2Q6P1M3 1020 aa20.61■□□□□ 0.89
COL7A1-209ENST00000474432 CCDC51Q96ER9 411 aa20.61■□□□□ 0.89
COL7A1-209ENST00000474432 GBP3Q9H0R5 595 aa20.61■□□□□ 0.89
COL7A1-209ENST00000474432 HCFC2Q9Y5Z7 792 aa20.61■□□□□ 0.89
COL7A1-209ENST00000474432 IRAK3Q9Y616 596 aa20.61■□□□□ 0.89
COL7A1-209ENST00000474432 TDRD15B5MCY1 1934 aaKnown RBP20.61■□□□□ 0.89
COL7A1-209ENST00000474432 TTLL13PA6NNM8 815 aa20.6■□□□□ 0.89
COL7A1-209ENST00000474432 DCXO43602 365 aa20.6■□□□□ 0.89
COL7A1-209ENST00000474432 CXCL14O95715 111 aa20.6■□□□□ 0.89
COL7A1-209ENST00000474432 EFEMP2O95967 443 aa20.6■□□□□ 0.89
COL7A1-209ENST00000474432 POMCP01189 267 aa20.6■□□□□ 0.89
COL7A1-209ENST00000474432 CTSAP10619 480 aa20.6■□□□□ 0.89
COL7A1-209ENST00000474432 ITGA4P13612 1032 aa20.6■□□□□ 0.89
COL7A1-209ENST00000474432 CYP11B2P19099 503 aa20.6■□□□□ 0.89
COL7A1-209ENST00000474432 RNASELQ05823 741 aaKnown RBP20.6■□□□□ 0.89
COL7A1-209ENST00000474432 CBX2Q14781 532 aaPredicted RBP20.6■□□□□ 0.89
COL7A1-209ENST00000474432 IL17AQ16552 155 aa20.6■□□□□ 0.89
COL7A1-209ENST00000474432 CDCA2Q69YH5 1023 aaPredicted RBP20.6■□□□□ 0.89
COL7A1-209ENST00000474432 NOTUMQ6P988 496 aa20.6■□□□□ 0.89
COL7A1-209ENST00000474432 CDR2LQ86X02 465 aaPredicted RBP20.6■□□□□ 0.89
COL7A1-209ENST00000474432 RNF135Q8IUD6 432 aa20.6■□□□□ 0.89
COL7A1-209ENST00000474432 CNNM3Q8NE01 707 aa20.6■□□□□ 0.89
COL7A1-209ENST00000474432 GSTCDQ8NEC7 633 aa20.6■□□□□ 0.89
COL7A1-209ENST00000474432 TMX3Q96JJ7 454 aa20.6■□□□□ 0.89
COL7A1-209ENST00000474432 POP1Q99575 1024 aaKnown RBP20.6■□□□□ 0.89
COL7A1-209ENST00000474432 TRIOO75962 3097 aa20.59■□□□□ 0.89
COL7A1-209ENST00000474432 A0A1B0GUA9 196 aa20.59■□□□□ 0.89
COL7A1-209ENST00000474432 ALADP13716 330 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms