RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 MRE11P49959 708 aa17.48■□□□□ 0.39
CCDC88B-205ENST00000472524 BCAR1P56945 870 aa17.48■□□□□ 0.39
CCDC88B-205ENST00000472524 KCNC3Q14003 757 aa17.48■□□□□ 0.39
CCDC88B-205ENST00000472524 TFDP1Q14186 410 aa17.48■□□□□ 0.39
CCDC88B-205ENST00000472524 MXD4Q14582 209 aaPredicted RBP17.48■□□□□ 0.39
CCDC88B-205ENST00000472524 NBR1Q14596 966 aa17.48■□□□□ 0.39
CCDC88B-205ENST00000472524 RABEP1Q15276 862 aa17.48■□□□□ 0.39
CCDC88B-205ENST00000472524 NOMO2Q5JPE7 1267 aa17.48■□□□□ 0.39
CCDC88B-205ENST00000472524 PDE12Q6L8Q7 609 aaKnown RBP17.48■□□□□ 0.39
CCDC88B-205ENST00000472524 TRIM67Q6ZTA4 783 aa17.48■□□□□ 0.39
CCDC88B-205ENST00000472524 NOSTRINQ8IVI9 506 aa17.48■□□□□ 0.39
CCDC88B-205ENST00000472524 SLC39A11Q8N1S5 342 aa17.48■□□□□ 0.39
CCDC88B-205ENST00000472524 PGBD4Q96DM1 585 aa17.48■□□□□ 0.39
CCDC88B-205ENST00000472524 CDCA3Q99618 268 aaPredicted RBP17.48■□□□□ 0.39
CCDC88B-205ENST00000472524 KCNH6Q9H252 994 aa17.48■□□□□ 0.39
CCDC88B-205ENST00000472524 TMEM221A6NGB7 291 aa17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 HIDE1A8MVS5 230 aa17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 INO80B-WBP1J3KQ70 363 aa17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 M0R296 226 aa17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 ZNF623O75123 536 aa17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 MED24O75448 989 aa17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 SPATA31C1P0DKV0 1188 aa17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 HOXA11P31270 313 aaPredicted RBP17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 CA8P35219 290 aa17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 ALDH7A1P49419 539 aaKnown RBP17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 PTENP60484 403 aa17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 ZXDAP98168 799 aa17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 RNASELQ05823 741 aaKnown RBP17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 ORC2Q13416 577 aaPredicted RBP17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 CAPSQ13938 189 aa17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 MAEAQ7L5Y9 396 aa17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 TMC7Q7Z402 723 aa17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 CATSPER3Q86XQ3 398 aa17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 TMEM169Q96HH4 297 aa17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 CPB2Q96IY4 423 aa17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 APOL5Q9BWW9 433 aa17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 GBP3Q9H0R5 595 aa17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 POLR3FQ9H1D9 316 aaPredicted RBP17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 S1PR5Q9H228 398 aa17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 TUFT1Q9NNX1 390 aa17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 TBC1D13Q9NVG8 400 aa17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 NOL7Q9UMY1 257 aaKnown RBP17.47■□□□□ 0.39
CCDC88B-205ENST00000472524 ST18O60284 1047 aa17.46■□□□□ 0.39
CCDC88B-205ENST00000472524 TSPAN1O60635 241 aa17.46■□□□□ 0.39
CCDC88B-205ENST00000472524 OFD1O75665 1012 aa17.46■□□□□ 0.39
CCDC88B-205ENST00000472524 GLRA2P23416 452 aa17.46■□□□□ 0.39
CCDC88B-205ENST00000472524 ARL2P36404 184 aa17.46■□□□□ 0.39
CCDC88B-205ENST00000472524 UBXN11Q5T124 520 aa17.46■□□□□ 0.39
CCDC88B-205ENST00000472524 IER5LQ5T953 404 aa17.46■□□□□ 0.39
CCDC88B-205ENST00000472524 ANKRD54Q6NXT1 300 aa17.46■□□□□ 0.39
CCDC88B-205ENST00000472524 LLGL2Q6P1M3 1020 aa17.46■□□□□ 0.39
CCDC88B-205ENST00000472524 SYCE2Q6PIF2 218 aa17.46■□□□□ 0.39
CCDC88B-205ENST00000472524 POTEGQ6S5H5 508 aa17.46■□□□□ 0.39
CCDC88B-205ENST00000472524 AGMOQ6ZNB7 445 aa17.46■□□□□ 0.39
CCDC88B-205ENST00000472524 BMP8AQ7Z5Y6 402 aa17.46■□□□□ 0.39
CCDC88B-205ENST00000472524 ERMNQ8TAM6 284 aa17.46■□□□□ 0.39
CCDC88B-205ENST00000472524 URGCPQ8TCY9 931 aa17.46■□□□□ 0.39
CCDC88B-205ENST00000472524 RSPH1Q8WYR4 309 aa17.46■□□□□ 0.39
CCDC88B-205ENST00000472524 PBXIP1Q96AQ6 731 aa17.46■□□□□ 0.39
CCDC88B-205ENST00000472524 NRDE2Q9H7Z3 1164 aa17.46■□□□□ 0.39
CCDC88B-205ENST00000472524 UPF2Q9HAU5 1272 aaKnown RBP17.46■□□□□ 0.39
CCDC88B-205ENST00000472524 NGRNQ9NPE2 291 aaKnown RBP17.46■□□□□ 0.39
CCDC88B-205ENST00000472524 GPRC5CQ9NQ84 441 aa17.46■□□□□ 0.39
CCDC88B-205ENST00000472524 MYH11P35749 1972 aa17.46■□□□□ 0.39
CCDC88B-205ENST00000472524 TRAPPC10P48553 1259 aa17.45■□□□□ 0.38
CCDC88B-205ENST00000472524 MBTD1Q05BQ5 628 aa17.45■□□□□ 0.38
CCDC88B-205ENST00000472524 SMC1AQ14683 1233 aaKnown RBP17.45■□□□□ 0.38
CCDC88B-205ENST00000472524 TMEM184AQ6ZMB5 413 aa17.45■□□□□ 0.38
CCDC88B-205ENST00000472524 TMEM173Q86WV6 379 aaPredicted RBP17.45■□□□□ 0.38
CCDC88B-205ENST00000472524 POLR3CQ9BUI4 534 aaPredicted RBP17.45■□□□□ 0.38
CCDC88B-205ENST00000472524 EIF2AQ9BY44 585 aaKnown RBP17.45■□□□□ 0.38
CCDC88B-205ENST00000472524 RSAD1Q9HA92 442 aa17.45■□□□□ 0.38
CCDC88B-205ENST00000472524 DNAJB4Q9UDY4 337 aa17.45■□□□□ 0.38
CCDC88B-205ENST00000472524 TRIP11Q15643 1979 aa17.44■□□□□ 0.38
CCDC88B-205ENST00000472524 FSD2A1L4K1 749 aa17.44■□□□□ 0.38
CCDC88B-205ENST00000472524 LRRIQ4A6NIV6 560 aa17.44■□□□□ 0.38
CCDC88B-205ENST00000472524 XRCC6P12956 609 aaKnown RBP eCLIP17.44■□□□□ 0.38
CCDC88B-205ENST00000472524 SP100P23497 879 aaPredicted RBP17.44■□□□□ 0.38
CCDC88B-205ENST00000472524 AXLP30530 894 aa17.44■□□□□ 0.38
CCDC88B-205ENST00000472524 NCBP1Q09161 790 aaKnown RBP17.44■□□□□ 0.38
CCDC88B-205ENST00000472524 NOTUMQ6P988 496 aa17.44■□□□□ 0.38
CCDC88B-205ENST00000472524 MRPL10Q7Z7H8 261 aaKnown RBP17.44■□□□□ 0.38
CCDC88B-205ENST00000472524 IFNLR1Q8IU57 520 aaPredicted RBP17.44■□□□□ 0.38
CCDC88B-205ENST00000472524 PRSS33Q8NF86 280 aa17.44■□□□□ 0.38
CCDC88B-205ENST00000472524 NACC1Q96RE7 527 aa17.44■□□□□ 0.38
CCDC88B-205ENST00000472524 CDH22Q9UJ99 828 aa17.44■□□□□ 0.38
CCDC88B-205ENST00000472524 DBR1Q9UK59 544 aaKnown RBP17.44■□□□□ 0.38
CCDC88B-205ENST00000472524 CNTNAP2Q9UHC6 1331 aa17.44■□□□□ 0.38
CCDC88B-205ENST00000472524 ARHGEF35A5YM69 484 aa17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 B4GALT3O60512 393 aa17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 POMCP01189 267 aa17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 GALTP07902 379 aa17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 SRGAP2BP0DMP2 458 aa17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 ITGA4P13612 1032 aa17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 NCLP19338 710 aaKnown RBP17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 U2AF2P26368 475 aaKnown RBP eCLIP17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 RPA1P27694 616 aa17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 SLC11A1P49279 550 aa17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 AFF1P51825 1210 aaKnown RBP17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 POU5F1BQ06416 359 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms