RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 SLC9A9Q8IVB4 645 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 PPM1KQ8N3J5 372 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 PBKQ96KB5 322 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 AGPAT1Q99943 283 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 KIAA1683Q9H0B3 1180 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 DPH5Q9H2P9 285 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 LRRC4CQ9HCJ2 640 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 ERVK-5Q9HDB9 667 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 SUCLA2Q9P2R7 463 aaPredicted RBP20.67■□□□□ 0.9
VIM-203ENST00000469543 AMFRQ9UKV5 643 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 GJA3Q9Y6H8 435 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 TNS1Q9HBL0 1735 aaKnown RBP20.67■□□□□ 0.9
VIM-203ENST00000469543 CYP26A1O43174 497 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 PPATQ06203 517 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 RPUSD2Q8IZ73 545 aaKnown RBP20.67■□□□□ 0.9
VIM-203ENST00000469543 JDP2Q8WYK2 163 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 RFFLQ8WZ73 363 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 ACCSQ96QU6 501 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 CENPHQ9H3R5 247 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 PXMP2Q9NR77 195 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 VWA5AO00534 786 aa20.66■□□□□ 0.9
VIM-203ENST00000469543 INTS8Q75QN2 995 aaKnown RBP20.66■□□□□ 0.9
VIM-203ENST00000469543 GLG1Q92896 1179 aa20.66■□□□□ 0.9
VIM-203ENST00000469543 TRIM51Q9BSJ1 452 aa20.66■□□□□ 0.9
VIM-203ENST00000469543 TAF1DQ9H5J8 278 aaPredicted RBP20.66■□□□□ 0.9
VIM-203ENST00000469543 CTDP1Q9Y5B0 961 aaPredicted RBP20.66■□□□□ 0.9
VIM-203ENST00000469543 CNGA1P29973 690 aa20.66■□□□□ 0.9
VIM-203ENST00000469543 EPC2Q52LR7 807 aa20.66■□□□□ 0.9
VIM-203ENST00000469543 DHX38Q92620 1227 aaKnown RBP20.66■□□□□ 0.9
VIM-203ENST00000469543 KRT35Q92764 455 aa20.66■□□□□ 0.9
VIM-203ENST00000469543 KREMEN1Q96MU8 473 aa20.66■□□□□ 0.9
VIM-203ENST00000469543 TMEM206Q9H813 350 aa20.66■□□□□ 0.9
VIM-203ENST00000469543 HACL1Q9UJ83 578 aa20.66■□□□□ 0.9
VIM-203ENST00000469543 PSME4Q14997 1843 aa20.66■□□□□ 0.9
VIM-203ENST00000469543 DDX3YO15523 660 aaKnown RBP20.65■□□□□ 0.9
VIM-203ENST00000469543 ZNF862O60290 1169 aa20.65■□□□□ 0.9
VIM-203ENST00000469543 TMEM253P0C7T8 217 aa20.65■□□□□ 0.9
VIM-203ENST00000469543 NPTX2P47972 431 aa20.65■□□□□ 0.9
VIM-203ENST00000469543 GTF2BQ00403 316 aa20.65■□□□□ 0.9
VIM-203ENST00000469543 DLK2Q6UY11 383 aa20.65■□□□□ 0.9
VIM-203ENST00000469543 LMBR1Q8WVP7 490 aa20.65■□□□□ 0.9
VIM-203ENST00000469543 PI4K2AQ9BTU6 479 aa20.65■□□□□ 0.9
VIM-203ENST00000469543 TCEAL9Q9UHQ7 104 aa20.65■□□□□ 0.9
VIM-203ENST00000469543 DBR1Q9UK59 544 aaKnown RBP20.65■□□□□ 0.9
VIM-203ENST00000469543 KIF13BQ9NQT8 1826 aa20.65■□□□□ 0.9
VIM-203ENST00000469543 UBE4BO95155 1302 aa20.65■□□□□ 0.9
VIM-203ENST00000469543 A0A0A6YYK5 440 aaPredicted RBP20.65■□□□□ 0.9
VIM-203ENST00000469543 SNRNP35Q16560 246 aaKnown RBP20.65■□□□□ 0.9
VIM-203ENST00000469543 ALS2CLQ60I27 953 aa20.65■□□□□ 0.9
VIM-203ENST00000469543 NOP9Q86U38 636 aaKnown RBP20.65■□□□□ 0.9
VIM-203ENST00000469543 MICALL2Q8IY33 904 aa20.65■□□□□ 0.9
VIM-203ENST00000469543 LPAR1Q92633 364 aa20.65■□□□□ 0.9
VIM-203ENST00000469543 PFASO15067 1338 aa20.64■□□□□ 0.9
VIM-203ENST00000469543 RGS20O76081 388 aa20.64■□□□□ 0.9
VIM-203ENST00000469543 HMGCS2P54868 508 aa20.64■□□□□ 0.9
VIM-203ENST00000469543 PDCLQ13371 301 aa20.64■□□□□ 0.9
VIM-203ENST00000469543 PRKG1Q13976 671 aa20.64■□□□□ 0.9
VIM-203ENST00000469543 KIF22Q14807 665 aa20.64■□□□□ 0.9
VIM-203ENST00000469543 TBC1D22BQ9NU19 505 aa20.64■□□□□ 0.9
VIM-203ENST00000469543 CTTNBP2NLQ9P2B4 639 aa20.64■□□□□ 0.9
VIM-203ENST00000469543 GABBR1Q9UBS5 961 aa20.64■□□□□ 0.9
VIM-203ENST00000469543 PLAAQ9Y263 795 aa20.64■□□□□ 0.9
VIM-203ENST00000469543 ALG6Q9Y672 507 aa20.64■□□□□ 0.9
VIM-203ENST00000469543 ADGRA3Q8IWK6 1321 aa20.64■□□□□ 0.89
VIM-203ENST00000469543 DENND3A2RUS2 1198 aa20.64■□□□□ 0.89
VIM-203ENST00000469543 DLATP10515 647 aaKnown RBP20.64■□□□□ 0.89
VIM-203ENST00000469543 PSMC5P62195 406 aa20.64■□□□□ 0.89
VIM-203ENST00000469543 UAP1Q16222 522 aaPredicted RBP20.64■□□□□ 0.89
VIM-203ENST00000469543 LMBRD2Q68DH5 695 aaPredicted RBP20.64■□□□□ 0.89
VIM-203ENST00000469543 MAATS1Q7Z4T9 603 aa20.64■□□□□ 0.89
VIM-203ENST00000469543 PHLDB2Q86SQ0 1253 aa20.64■□□□□ 0.89
VIM-203ENST00000469543 TMEM161BQ8NDZ6 487 aa20.64■□□□□ 0.89
VIM-203ENST00000469543 RUBCNQ92622 972 aa20.64■□□□□ 0.89
VIM-203ENST00000469543 RNPC3Q96LT9 517 aaKnown RBP20.64■□□□□ 0.89
VIM-203ENST00000469543 CAPS2Q9BXY5 557 aa20.64■□□□□ 0.89
VIM-203ENST00000469543 ISCUQ9H1K1 167 aa20.64■□□□□ 0.89
VIM-203ENST00000469543 RNF146Q9NTX7 359 aa20.64■□□□□ 0.89
VIM-203ENST00000469543 PIM2Q9P1W9 311 aa20.64■□□□□ 0.89
VIM-203ENST00000469543 FER1L6Q2WGJ9 1857 aa20.64■□□□□ 0.89
VIM-203ENST00000469543 OPA1O60313 960 aa20.63■□□□□ 0.89
VIM-203ENST00000469543 MMEP08473 750 aa20.63■□□□□ 0.89
VIM-203ENST00000469543 MXI1P50539 228 aa20.63■□□□□ 0.89
VIM-203ENST00000469543 GNGT1P63211 74 aa20.63■□□□□ 0.89
VIM-203ENST00000469543 SWSAP1Q6NVH7 229 aa20.63■□□□□ 0.89
VIM-203ENST00000469543 RASGEF1CQ8N431 466 aa20.63■□□□□ 0.89
VIM-203ENST00000469543 NEK9Q8TD19 979 aa20.63■□□□□ 0.89
VIM-203ENST00000469543 INTUQ9ULD6 942 aa20.63■□□□□ 0.89
VIM-203ENST00000469543 TBX20Q9UMR3 447 aa20.63■□□□□ 0.89
VIM-203ENST00000469543 ANKRD62A6NC57 917 aa20.63■□□□□ 0.89
VIM-203ENST00000469543 NFKBIEO00221 500 aa20.63■□□□□ 0.89
VIM-203ENST00000469543 CHRNB2P17787 502 aa20.63■□□□□ 0.89
VIM-203ENST00000469543 HSD17B3P37058 310 aa20.63■□□□□ 0.89
VIM-203ENST00000469543 PPFIA1Q13136 1202 aa20.63■□□□□ 0.89
VIM-203ENST00000469543 C2CD6Q53TS8 623 aa20.63■□□□□ 0.89
VIM-203ENST00000469543 CEP85LQ5SZL2 805 aa20.63■□□□□ 0.89
VIM-203ENST00000469543 SLC39A4Q6P5W5 647 aa20.63■□□□□ 0.89
VIM-203ENST00000469543 C4orf19Q8IY42 314 aa20.63■□□□□ 0.89
VIM-203ENST00000469543 SYCE1Q8N0S2 351 aa20.63■□□□□ 0.89
VIM-203ENST00000469543 TAOK3Q9H2K8 898 aa20.63■□□□□ 0.89
VIM-203ENST00000469543 ZEB2O60315 1214 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms