RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 TTC12Q9H892 705 aaPredicted RBP27.31■■□□□ 1.96
PTCH1-210ENST00000468211 A0A087WWV3 80 aa27.3■■□□□ 1.96
PTCH1-210ENST00000468211 GAS2O43903 313 aaKnown RBP27.3■■□□□ 1.96
PTCH1-210ENST00000468211 DDHD2O94830 711 aa27.3■■□□□ 1.96
PTCH1-210ENST00000468211 CA8P35219 290 aa27.3■■□□□ 1.96
PTCH1-210ENST00000468211 RNASELQ05823 741 aaKnown RBP27.3■■□□□ 1.96
PTCH1-210ENST00000468211 DDX53Q86TM3 631 aaKnown RBP27.3■■□□□ 1.96
PTCH1-210ENST00000468211 RSPH1Q8WYR4 309 aa27.3■■□□□ 1.96
PTCH1-210ENST00000468211 PGBD4Q96DM1 585 aa27.3■■□□□ 1.96
PTCH1-210ENST00000468211 MTMR9Q96QG7 549 aa27.3■■□□□ 1.96
PTCH1-210ENST00000468211 MYO10Q9HD67 2058 aa27.29■■□□□ 1.96
PTCH1-210ENST00000468211 ASAP2O43150 1006 aa27.29■■□□□ 1.96
PTCH1-210ENST00000468211 LYPLA2O95372 231 aa27.29■■□□□ 1.96
PTCH1-210ENST00000468211 HOXB8P17481 243 aaPredicted RBP27.29■■□□□ 1.96
PTCH1-210ENST00000468211 HOXD11P31277 338 aaPredicted RBP27.29■■□□□ 1.96
PTCH1-210ENST00000468211 TXKP42681 527 aa27.29■■□□□ 1.96
PTCH1-210ENST00000468211 SMG8Q8ND04 991 aaKnown RBP27.29■■□□□ 1.96
PTCH1-210ENST00000468211 CASP10Q92851 521 aa27.29■■□□□ 1.96
PTCH1-210ENST00000468211 TMEM60Q9H2L4 133 aa27.29■■□□□ 1.96
PTCH1-210ENST00000468211 TDRD15B5MCY1 1934 aaKnown RBP27.28■■□□□ 1.96
PTCH1-210ENST00000468211 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP27.28■■□□□ 1.96
PTCH1-210ENST00000468211 CTSAP10619 480 aa27.28■■□□□ 1.96
PTCH1-210ENST00000468211 SP100P23497 879 aaPredicted RBP27.28■■□□□ 1.96
PTCH1-210ENST00000468211 ZXDAP98168 799 aa27.28■■□□□ 1.96
PTCH1-210ENST00000468211 ERICH6BQ5W0A0 696 aa27.28■■□□□ 1.96
PTCH1-210ENST00000468211 KANK3Q6NY19 840 aa27.28■■□□□ 1.96
PTCH1-210ENST00000468211 TRIM67Q6ZTA4 783 aa27.28■■□□□ 1.96
PTCH1-210ENST00000468211 ASAP3Q8TDY4 903 aa27.28■■□□□ 1.96
PTCH1-210ENST00000468211 EIF2AQ9BY44 585 aaKnown RBP27.28■■□□□ 1.96
PTCH1-210ENST00000468211 RSAD1Q9HA92 442 aa27.28■■□□□ 1.96
PTCH1-210ENST00000468211 NEMFO60524 1076 aa27.27■■□□□ 1.96
PTCH1-210ENST00000468211 TSPAN1O60635 241 aa27.27■■□□□ 1.96
PTCH1-210ENST00000468211 PTENP60484 403 aa27.27■■□□□ 1.96
PTCH1-210ENST00000468211 GUCY1B3Q02153 619 aa27.27■■□□□ 1.96
PTCH1-210ENST00000468211 FEZF2Q8TBJ5 459 aa27.27■■□□□ 1.96
PTCH1-210ENST00000468211 PIGOQ8TEQ8 1089 aa27.27■■□□□ 1.96
PTCH1-210ENST00000468211 CPB2Q96IY4 423 aa27.27■■□□□ 1.96
PTCH1-210ENST00000468211 ANKEF1Q9NU02 776 aa27.27■■□□□ 1.96
PTCH1-210ENST00000468211 IRAK3Q9Y616 596 aa27.27■■□□□ 1.96
PTCH1-210ENST00000468211 POTEMA6NI47 508 aa27.26■■□□□ 1.95
PTCH1-210ENST00000468211 POMCP01189 267 aa27.26■■□□□ 1.95
PTCH1-210ENST00000468211 WEE2P0C1S8 567 aa27.26■■□□□ 1.95
PTCH1-210ENST00000468211 EPCAMP16422 314 aa27.26■■□□□ 1.95
PTCH1-210ENST00000468211 CAPSQ13938 189 aa27.26■■□□□ 1.95
PTCH1-210ENST00000468211 C12orf76Q8N812 135 aaPredicted RBP27.26■■□□□ 1.95
PTCH1-210ENST00000468211 URGCPQ8TCY9 931 aa27.26■■□□□ 1.95
PTCH1-210ENST00000468211 RNF39Q9H2S5 420 aa27.26■■□□□ 1.95
PTCH1-210ENST00000468211 POMKQ9H5K3 350 aa27.26■■□□□ 1.95
PTCH1-210ENST00000468211 CNTNAP2Q9UHC6 1331 aa27.25■■□□□ 1.95
PTCH1-210ENST00000468211 TMEM221A6NGB7 291 aa27.25■■□□□ 1.95
PTCH1-210ENST00000468211 M0R296 226 aa27.25■■□□□ 1.95
PTCH1-210ENST00000468211 NCLP19338 710 aaKnown RBP27.25■■□□□ 1.95
PTCH1-210ENST00000468211 ARL2P36404 184 aa27.25■■□□□ 1.95
PTCH1-210ENST00000468211 MBTD1Q05BQ5 628 aa27.25■■□□□ 1.95
PTCH1-210ENST00000468211 TRIM29Q14134 588 aa27.25■■□□□ 1.95
PTCH1-210ENST00000468211 MXD4Q14582 209 aaPredicted RBP27.25■■□□□ 1.95
PTCH1-210ENST00000468211 AMHR2Q16671 573 aa27.25■■□□□ 1.95
PTCH1-210ENST00000468211 TPRNQ4KMQ1 711 aa27.25■■□□□ 1.95
PTCH1-210ENST00000468211 IFNLR1Q8IU57 520 aaPredicted RBP27.25■■□□□ 1.95
PTCH1-210ENST00000468211 SLC22A17Q8WUG5 538 aa27.25■■□□□ 1.95
PTCH1-210ENST00000468211 ADAM7Q9H2U9 754 aa27.25■■□□□ 1.95
PTCH1-210ENST00000468211 HES2Q9Y543 173 aa27.25■■□□□ 1.95
PTCH1-210ENST00000468211 IPPQ9Y573 584 aa27.25■■□□□ 1.95
PTCH1-210ENST00000468211 ERLIN2O94905 339 aa27.24■■□□□ 1.95
PTCH1-210ENST00000468211 ATP2B1P20020 1258 aa27.24■■□□□ 1.95
PTCH1-210ENST00000468211 GLRA2P23416 452 aa27.24■■□□□ 1.95
PTCH1-210ENST00000468211 RARRES1P49788 294 aa27.24■■□□□ 1.95
PTCH1-210ENST00000468211 PTPN14Q15678 1187 aa27.24■■□□□ 1.95
PTCH1-210ENST00000468211 FBXL18Q96ME1 805 aa27.24■■□□□ 1.95
PTCH1-210ENST00000468211 KMT2EQ8IZD2 1858 aa27.23■■□□□ 1.95
PTCH1-210ENST00000468211 INO80B-WBP1J3KQ70 363 aa27.23■■□□□ 1.95
PTCH1-210ENST00000468211 DGAT1O75907 488 aa27.23■■□□□ 1.95
PTCH1-210ENST00000468211 SPATA31C1P0DKV0 1188 aa27.23■■□□□ 1.95
PTCH1-210ENST00000468211 MCM7P33993 719 aa27.23■■□□□ 1.95
PTCH1-210ENST00000468211 BMS1Q14692 1282 aaKnown RBP27.23■■□□□ 1.95
PTCH1-210ENST00000468211 RARS2Q5T160 578 aaKnown RBP27.23■■□□□ 1.95
PTCH1-210ENST00000468211 BMP8AQ7Z5Y6 402 aa27.23■■□□□ 1.95
PTCH1-210ENST00000468211 MFSD14AQ96MC6 490 aa27.23■■□□□ 1.95
PTCH1-210ENST00000468211 MIOSQ9NXC5 875 aa27.23■■□□□ 1.95
PTCH1-210ENST00000468211 C2orf16Q68DN1 1984 aa27.22■■□□□ 1.95
PTCH1-210ENST00000468211 PLXNA3P51805 1871 aa27.22■■□□□ 1.95
PTCH1-210ENST00000468211 DENND4AQ7Z401 1863 aa27.22■■□□□ 1.95
PTCH1-210ENST00000468211 CARNS1A5YM72 827 aa27.22■■□□□ 1.95
PTCH1-210ENST00000468211 NRP1O14786 923 aa27.22■■□□□ 1.95
PTCH1-210ENST00000468211 SSBP05455 408 aaKnown RBP eCLIP27.22■■□□□ 1.95
PTCH1-210ENST00000468211 ITGA4P13612 1032 aa27.22■■□□□ 1.95
PTCH1-210ENST00000468211 ITIH3Q06033 890 aa27.22■■□□□ 1.95
PTCH1-210ENST00000468211 POU5F1BQ06416 359 aa27.22■■□□□ 1.95
PTCH1-210ENST00000468211 TFDP1Q14186 410 aa27.22■■□□□ 1.95
PTCH1-210ENST00000468211 CES5AQ6NT32 575 aa27.22■■□□□ 1.95
PTCH1-210ENST00000468211 CCDC83Q8IWF9 413 aa27.22■■□□□ 1.95
PTCH1-210ENST00000468211 GAD1Q99259 594 aa27.22■■□□□ 1.95
PTCH1-210ENST00000468211 TMEM175Q9BSA9 504 aa27.22■■□□□ 1.95
PTCH1-210ENST00000468211 POLR3FQ9H1D9 316 aaPredicted RBP27.22■■□□□ 1.95
PTCH1-210ENST00000468211 GPRC5CQ9NQ84 441 aa27.22■■□□□ 1.95
PTCH1-210ENST00000468211 TSHZ2Q9NRE2 1034 aa27.22■■□□□ 1.95
PTCH1-210ENST00000468211 KANSL3Q9P2N6 904 aa27.22■■□□□ 1.95
PTCH1-210ENST00000468211 FAN1Q9Y2M0 1017 aa27.22■■□□□ 1.95
PTCH1-210ENST00000468211 ZDBF2Q9HCK1 2354 aa27.22■■□□□ 1.95
PTCH1-210ENST00000468211 B4GALT5O43286 388 aa27.21■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms