RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 NRP1O14786 923 aa16.27■□□□□ 0.19
CXCR4-203ENST00000466288 EDIL3O43854 480 aa16.27■□□□□ 0.19
CXCR4-203ENST00000466288 ADH1AP07327 375 aa16.27■□□□□ 0.19
CXCR4-203ENST00000466288 MYBP10242 640 aa16.27■□□□□ 0.19
CXCR4-203ENST00000466288 AK2P54819 239 aa16.27■□□□□ 0.19
CXCR4-203ENST00000466288 ZNF410Q86VK4 478 aa16.27■□□□□ 0.19
CXCR4-203ENST00000466288 PJA1Q8NG27 643 aa16.27■□□□□ 0.19
CXCR4-203ENST00000466288 URGCPQ8TCY9 931 aa16.27■□□□□ 0.19
CXCR4-203ENST00000466288 PGBD4Q96DM1 585 aa16.27■□□□□ 0.19
CXCR4-203ENST00000466288 NIFKQ9BYG3 293 aaKnown RBP16.27■□□□□ 0.19
CXCR4-203ENST00000466288 FOXQ1Q9C009 403 aa16.27■□□□□ 0.19
CXCR4-203ENST00000466288 INO80BQ9C086 356 aaPredicted RBP16.27■□□□□ 0.19
CXCR4-203ENST00000466288 ZMYND12Q9H0C1 365 aa16.27■□□□□ 0.19
CXCR4-203ENST00000466288 SLC2A4RGQ9NR83 387 aa16.27■□□□□ 0.19
CXCR4-203ENST00000466288 MARCH5Q9NX47 278 aa16.27■□□□□ 0.19
CXCR4-203ENST00000466288 FAN1Q9Y2M0 1017 aa16.27■□□□□ 0.19
CXCR4-203ENST00000466288 PCDHB2Q9Y5E7 798 aa16.27■□□□□ 0.19
CXCR4-203ENST00000466288 TPRP12270 2363 aaKnown RBP16.27■□□□□ 0.19
CXCR4-203ENST00000466288 ESYT2A0FGR8 921 aa16.26■□□□□ 0.19
CXCR4-203ENST00000466288 MSH4O15457 936 aa16.26■□□□□ 0.19
CXCR4-203ENST00000466288 ZBTB43O43298 467 aa16.26■□□□□ 0.19
CXCR4-203ENST00000466288 LRRN2O75325 713 aa16.26■□□□□ 0.19
CXCR4-203ENST00000466288 STBD1O95210 358 aa16.26■□□□□ 0.19
CXCR4-203ENST00000466288 EFEMP2O95967 443 aa16.26■□□□□ 0.19
CXCR4-203ENST00000466288 GLUD1P00367 558 aa16.26■□□□□ 0.19
CXCR4-203ENST00000466288 URODP06132 367 aa16.26■□□□□ 0.19
CXCR4-203ENST00000466288 LAMP2P13473 410 aa16.26■□□□□ 0.19
CXCR4-203ENST00000466288 CDC27P30260 824 aa16.26■□□□□ 0.19
CXCR4-203ENST00000466288 HTR4Q13639 388 aa16.26■□□□□ 0.19
CXCR4-203ENST00000466288 PFKFB3Q16875 520 aaPredicted RBP16.26■□□□□ 0.19
CXCR4-203ENST00000466288 MTERF2Q49AM1 385 aa16.26■□□□□ 0.19
CXCR4-203ENST00000466288 DCLRE1AQ6PJP8 1040 aa16.26■□□□□ 0.19
CXCR4-203ENST00000466288 MRPL10Q7Z7H8 261 aaKnown RBP16.26■□□□□ 0.19
CXCR4-203ENST00000466288 RNF168Q8IYW5 571 aaPredicted RBP16.26■□□□□ 0.19
CXCR4-203ENST00000466288 SMG7Q92540 1137 aaKnown RBP16.26■□□□□ 0.19
CXCR4-203ENST00000466288 HERC2P3Q9BVR0 1158 aa16.26■□□□□ 0.19
CXCR4-203ENST00000466288 RXFP1Q9HBX9 757 aa16.26■□□□□ 0.19
CXCR4-203ENST00000466288 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.26■□□□□ 0.19
CXCR4-203ENST00000466288 DPP7Q9UHL4 492 aa16.26■□□□□ 0.19
CXCR4-203ENST00000466288 MYH9P35579 1960 aaKnown RBP16.26■□□□□ 0.19
CXCR4-203ENST00000466288 TMEM150BA6NC51 233 aa16.25■□□□□ 0.19
CXCR4-203ENST00000466288 CHMP2AO43633 222 aa16.25■□□□□ 0.19
CXCR4-203ENST00000466288 KINO60870 393 aaKnown RBP16.25■□□□□ 0.19
CXCR4-203ENST00000466288 SFNP31947 248 aa16.25■□□□□ 0.19
CXCR4-203ENST00000466288 STARD6P59095 220 aa16.25■□□□□ 0.19
CXCR4-203ENST00000466288 KIAA0319Q5VV43 1072 aa16.25■□□□□ 0.19
CXCR4-203ENST00000466288 CATSPER4Q7RTX7 472 aa16.25■□□□□ 0.19
CXCR4-203ENST00000466288 RHPN2Q8IUC4 686 aa16.25■□□□□ 0.19
CXCR4-203ENST00000466288 KSR1Q8IVT5 923 aa16.25■□□□□ 0.19
CXCR4-203ENST00000466288 RIT2Q99578 217 aa16.25■□□□□ 0.19
CXCR4-203ENST00000466288 SH2D3AQ9BRG2 576 aa16.25■□□□□ 0.19
CXCR4-203ENST00000466288 UNC45AQ9H3U1 944 aa16.25■□□□□ 0.19
CXCR4-203ENST00000466288 RSAD1Q9HA92 442 aa16.25■□□□□ 0.19
CXCR4-203ENST00000466288 AGPAT5Q9NUQ2 364 aa16.25■□□□□ 0.19
CXCR4-203ENST00000466288 KANSL3Q9P2N6 904 aa16.25■□□□□ 0.19
CXCR4-203ENST00000466288 SUCLA2Q9P2R7 463 aaPredicted RBP16.25■□□□□ 0.19
CXCR4-203ENST00000466288 SEPT9Q9UHD8 586 aaPredicted RBP16.25■□□□□ 0.19
CXCR4-203ENST00000466288 SSX2IPQ9Y2D8 614 aa16.25■□□□□ 0.19
CXCR4-203ENST00000466288 POMCP01189 267 aa16.24■□□□□ 0.19
CXCR4-203ENST00000466288 DNM2P50570 870 aa16.24■□□□□ 0.19
CXCR4-203ENST00000466288 JAK3P52333 1124 aa16.24■□□□□ 0.19
CXCR4-203ENST00000466288 EXOSC10Q01780 885 aaKnown RBP16.24■□□□□ 0.19
CXCR4-203ENST00000466288 ELMSAN1Q6PJG2 1045 aa16.24■□□□□ 0.19
CXCR4-203ENST00000466288 REXO1Q8N1G1 1221 aaKnown RBP16.24■□□□□ 0.19
CXCR4-203ENST00000466288 ST13P5Q8NFI4 369 aaPredicted RBP16.24■□□□□ 0.19
CXCR4-203ENST00000466288 HDAC7Q8WUI4 952 aa16.24■□□□□ 0.19
CXCR4-203ENST00000466288 SLC5A5Q92911 643 aa16.24■□□□□ 0.19
CXCR4-203ENST00000466288 FAM193BQ96PV7 902 aaPredicted RBP16.24■□□□□ 0.19
CXCR4-203ENST00000466288 NT5C3AQ9H0P0 336 aa16.24■□□□□ 0.19
CXCR4-203ENST00000466288 IFT122Q9HBG6 1241 aa16.24■□□□□ 0.19
CXCR4-203ENST00000466288 NUMBLQ9Y6R0 609 aa16.24■□□□□ 0.19
CXCR4-203ENST00000466288 ACACBO00763 2458 aa16.24■□□□□ 0.19
CXCR4-203ENST00000466288 GOLGA8AA7E2F4 631 aa16.23■□□□□ 0.19
CXCR4-203ENST00000466288 GOLGA8BA8MQT2 603 aa16.23■□□□□ 0.19
CXCR4-203ENST00000466288 MAFO75444 373 aaPredicted RBP16.23■□□□□ 0.19
CXCR4-203ENST00000466288 SPATA31D3P0C874 917 aa16.23■□□□□ 0.19
CXCR4-203ENST00000466288 ATXN1P54253 815 aaKnown RBP16.23■□□□□ 0.19
CXCR4-203ENST00000466288 ZNF528Q3MIS6 628 aa16.23■□□□□ 0.19
CXCR4-203ENST00000466288 XKR3Q5GH77 459 aa16.23■□□□□ 0.19
CXCR4-203ENST00000466288 VARS2Q5ST30 1063 aaKnown RBP16.23■□□□□ 0.19
CXCR4-203ENST00000466288 SPATA31D4Q6ZUB0 917 aa16.23■□□□□ 0.19
CXCR4-203ENST00000466288 GET4Q7L5D6 327 aaPredicted RBP16.23■□□□□ 0.19
CXCR4-203ENST00000466288 GJA10Q969M2 543 aa16.23■□□□□ 0.19
CXCR4-203ENST00000466288 BORCS6Q96GS4 357 aa16.23■□□□□ 0.19
CXCR4-203ENST00000466288 NLRP4Q96MN2 994 aa16.23■□□□□ 0.19
CXCR4-203ENST00000466288 TCEANC2Q96MN5 208 aa16.23■□□□□ 0.19
CXCR4-203ENST00000466288 RPP25Q9BUL9 199 aaKnown RBP16.23■□□□□ 0.19
CXCR4-203ENST00000466288 C6orf50Q9HD87 102 aa16.23■□□□□ 0.19
CXCR4-203ENST00000466288 PRG3Q9Y2Y8 225 aaPredicted RBP16.23■□□□□ 0.19
CXCR4-203ENST00000466288 FANCMQ8IYD8 2048 aa16.23■□□□□ 0.19
CXCR4-203ENST00000466288 CNTNAP2Q9UHC6 1331 aa16.23■□□□□ 0.19
CXCR4-203ENST00000466288 GAS7O60861 476 aa16.22■□□□□ 0.19
CXCR4-203ENST00000466288 HOXA11P31270 313 aaPredicted RBP16.22■□□□□ 0.19
CXCR4-203ENST00000466288 ADD1P35611 737 aaKnown RBP16.22■□□□□ 0.19
CXCR4-203ENST00000466288 GLUD2P49448 558 aa16.22■□□□□ 0.19
CXCR4-203ENST00000466288 DSG1Q02413 1049 aa16.22■□□□□ 0.19
CXCR4-203ENST00000466288 UBXN11Q5T124 520 aa16.22■□□□□ 0.19
CXCR4-203ENST00000466288 LRCH2Q5VUJ6 765 aa16.22■□□□□ 0.19
CXCR4-203ENST00000466288 COLGALT2Q8IYK4 626 aa16.22■□□□□ 0.19
CXCR4-203ENST00000466288 DDX23Q9BUQ8 820 aaKnown RBP16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms