RNA–Protein interactions for RNA: ENST00000463622.6

SCFD1-204, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 1,943 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-204ENST00000463622 CAP1Q01518 475 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 RTP5Q14D33 572 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 HSP90AB3PQ58FF7 597 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 PRAMEF18Q5VWM3 479 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 E4F1Q66K89 784 aaPredicted RBP4.54□□□□□ -1.68
SCFD1-204ENST00000463622 IQCEQ6IPM2 695 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 ETV3LQ6ZN32 361 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 EEPD1Q7L9B9 569 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 CELF1Q92879 486 aaKnown RBP4.54□□□□□ -1.68
SCFD1-204ENST00000463622 EYA3Q99504 573 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 MYH16Q9H6N6 1097 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 USP40Q9NVE5 1235 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 SZT2Q5T011 3432 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 LAMB4A4D0S4 1761 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 A0A1W2PQU0 124 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 CPP00450 1065 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 MMP14P50281 582 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 CXorf38Q8TB03 319 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 SEC14L1Q92503 715 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 C1orf159Q96HA4 380 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 ZNF333Q96JL9 665 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 IER2Q9BTL4 223 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 C11orf84Q9BUA3 381 aaPredicted RBP4.54□□□□□ -1.68
SCFD1-204ENST00000463622 BDH2Q9BUT1 245 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 MYOZ2Q9NPC6 264 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 CHPF2Q9P2E5 772 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 TRMT112Q9UI30 125 aaKnown RBP4.54□□□□□ -1.68
SCFD1-204ENST00000463622 RCAN3Q9UKA8 241 aa4.54□□□□□ -1.68
SCFD1-204ENST00000463622 RANBP2P49792 3224 aaKnown RBP4.53□□□□□ -1.68
SCFD1-204ENST00000463622 KIAA0100Q14667 2235 aaKnown RBP4.53□□□□□ -1.68
SCFD1-204ENST00000463622 MANSC4A6NHS7 340 aaPredicted RBP4.53□□□□□ -1.68
SCFD1-204ENST00000463622 MYO1BO43795 1136 aa4.53□□□□□ -1.68
SCFD1-204ENST00000463622 MSCO60682 206 aa4.53□□□□□ -1.68
SCFD1-204ENST00000463622 LTBRP36941 435 aa4.53□□□□□ -1.68
SCFD1-204ENST00000463622 SARSP49591 514 aaKnown RBP4.53□□□□□ -1.68
SCFD1-204ENST00000463622 CALD1Q05682 793 aaKnown RBP4.53□□□□□ -1.68
SCFD1-204ENST00000463622 KCNAB2Q13303 367 aa4.53□□□□□ -1.68
SCFD1-204ENST00000463622 MROH9Q5TGP6 573 aa4.53□□□□□ -1.68
SCFD1-204ENST00000463622 COPS6Q7L5N1 327 aa4.53□□□□□ -1.68
SCFD1-204ENST00000463622 FRMD5Q7Z6J6 570 aa4.53□□□□□ -1.68
SCFD1-204ENST00000463622 ARRDC4Q8NCT1 418 aa4.53□□□□□ -1.68
SCFD1-204ENST00000463622 ERO1AQ96HE7 468 aa4.53□□□□□ -1.68
SCFD1-204ENST00000463622 ZBED3Q96IU2 234 aaPredicted RBP4.53□□□□□ -1.68
SCFD1-204ENST00000463622 TEPSINQ96N21 525 aa4.53□□□□□ -1.68
SCFD1-204ENST00000463622 ISCA1Q9BUE6 129 aa4.53□□□□□ -1.68
SCFD1-204ENST00000463622 KRTAP4-2Q9BYR5 136 aa4.53□□□□□ -1.68
SCFD1-204ENST00000463622 BABAM1Q9NWV8 329 aa4.53□□□□□ -1.68
SCFD1-204ENST00000463622 CLDND1Q9NY35 253 aa4.53□□□□□ -1.68
SCFD1-204ENST00000463622 PPARGC1AQ9UBK2 798 aaKnown RBP4.53□□□□□ -1.68
SCFD1-204ENST00000463622 X6R8D5 127 aa4.53□□□□□ -1.68
SCFD1-204ENST00000463622 TRIOBPQ9H2D6 2365 aa4.53□□□□□ -1.68
SCFD1-204ENST00000463622 DUOX1Q9NRD9 1551 aa4.53□□□□□ -1.69
SCFD1-204ENST00000463622 CENPFP49454 3210 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 COL6A3P12111 3177 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 WNT10BO00744 389 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 SMARCA5O60264 1052 aaPredicted RBP4.52□□□□□ -1.69
SCFD1-204ENST00000463622 NOBOXO60393 691 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 CAPNS1P04632 268 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 CELA3BP08861 270 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 RRP1P56182 461 aaKnown RBP4.52□□□□□ -1.69
SCFD1-204ENST00000463622 PLP2Q04941 152 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 LSAMPQ13449 338 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 DDR2Q16832 855 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 UBXN11Q5T124 520 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 SLC35F1Q5T1Q4 408 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 ARMC9Q7Z3E5 817 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 MIB1Q86YT6 1006 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 JAM3Q9BX67 310 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 SMC4Q9NTJ3 1288 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 NTMQ9P121 344 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 NOB1Q9ULX3 412 aaKnown RBP4.52□□□□□ -1.69
SCFD1-204ENST00000463622 SCAF8Q9UPN6 1271 aaKnown RBP4.52□□□□□ -1.69
SCFD1-204ENST00000463622 COA3Q9Y2R0 106 aaPredicted RBP4.52□□□□□ -1.69
SCFD1-204ENST00000463622 CUL9Q8IWT3 2517 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 BLACEA4D250 179 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 KLF4O43474 513 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 DLX3O60479 287 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 ZBTB48P10074 688 aaPredicted RBP4.52□□□□□ -1.69
SCFD1-204ENST00000463622 TRIM27P14373 513 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 CNR2P34972 360 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 NF2P35240 595 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 SP3Q02447 781 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 CR1LQ2VPA4 569 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 DACT2Q5SW24 774 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 ACBD5Q5T8D3 534 aaPredicted RBP4.52□□□□□ -1.69
SCFD1-204ENST00000463622 MCTP2Q6DN12 878 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 USP53Q70EK8 1073 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 UBE2Q1Q7Z7E8 422 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 ZNF761Q86XN6 746 aaPredicted RBP4.52□□□□□ -1.69
SCFD1-204ENST00000463622 RIOX2Q8IUF8 465 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 RBM12BQ8IXT5 1001 aaKnown RBP4.52□□□□□ -1.69
SCFD1-204ENST00000463622 LINC00482Q8N8I6 264 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 CD99L2Q8TCZ2 262 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 FAM89AQ96GI7 184 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 CCDC140Q96MF4 163 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 ZSWIM3Q96MP5 696 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 PTPN18Q99952 460 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 YIPF4Q9BSR8 244 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 KRTAP9-3Q9BYQ3 159 aa4.52□□□□□ -1.69
SCFD1-204ENST00000463622 BRCA2P51587 3418 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms