RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 NBR1Q14596 966 aa23.08■■□□□ 1.29
SDC1-205ENST00000447124 AMHR2Q16671 573 aa23.08■■□□□ 1.29
SDC1-205ENST00000447124 TTC38Q5R3I4 469 aa23.08■■□□□ 1.29
SDC1-205ENST00000447124 TMEM184AQ6ZMB5 413 aa23.08■■□□□ 1.29
SDC1-205ENST00000447124 NOSTRINQ8IVI9 506 aa23.08■■□□□ 1.29
SDC1-205ENST00000447124 MRPL43Q8N983 215 aaKnown RBP23.08■■□□□ 1.29
SDC1-205ENST00000447124 BCL7CQ8WUZ0 217 aaPredicted RBP23.08■■□□□ 1.29
SDC1-205ENST00000447124 POLR3CQ9BUI4 534 aaPredicted RBP23.08■■□□□ 1.29
SDC1-205ENST00000447124 EIF2AQ9BY44 585 aaKnown RBP23.08■■□□□ 1.29
SDC1-205ENST00000447124 RNF39Q9H2S5 420 aa23.08■■□□□ 1.29
SDC1-205ENST00000447124 GPRC5CQ9NQ84 441 aa23.08■■□□□ 1.29
SDC1-205ENST00000447124 DNAJB4Q9UDY4 337 aa23.08■■□□□ 1.29
SDC1-205ENST00000447124 FAM86C2PA6NEL3 165 aa23.07■■□□□ 1.28
SDC1-205ENST00000447124 C2orf71A6NGG8 1288 aa23.07■■□□□ 1.28
SDC1-205ENST00000447124 GPR37L1O60883 481 aa23.07■■□□□ 1.28
SDC1-205ENST00000447124 ZC3H11AO75152 810 aaKnown RBP eCLIP23.07■■□□□ 1.28
SDC1-205ENST00000447124 DDHD2O94830 711 aa23.07■■□□□ 1.28
SDC1-205ENST00000447124 NCLP19338 710 aaKnown RBP23.07■■□□□ 1.28
SDC1-205ENST00000447124 TOB1P50616 345 aaPredicted RBP23.07■■□□□ 1.28
SDC1-205ENST00000447124 MBTD1Q05BQ5 628 aa23.07■■□□□ 1.28
SDC1-205ENST00000447124 MAEAQ7L5Y9 396 aa23.07■■□□□ 1.28
SDC1-205ENST00000447124 CPB2Q96IY4 423 aa23.07■■□□□ 1.28
SDC1-205ENST00000447124 INO80B-WBP1J3KQ70 363 aa23.06■■□□□ 1.28
SDC1-205ENST00000447124 USO1O60763 962 aaKnown RBP23.06■■□□□ 1.28
SDC1-205ENST00000447124 U2AF2P26368 475 aaKnown RBP eCLIP23.06■■□□□ 1.28
SDC1-205ENST00000447124 SLC11A1P49279 550 aa23.06■■□□□ 1.28
SDC1-205ENST00000447124 ORC2Q13416 577 aaPredicted RBP23.06■■□□□ 1.28
SDC1-205ENST00000447124 TFDP1Q14186 410 aa23.06■■□□□ 1.28
SDC1-205ENST00000447124 RABEP1Q15276 862 aa23.06■■□□□ 1.28
SDC1-205ENST00000447124 ECM1Q16610 540 aa23.06■■□□□ 1.28
SDC1-205ENST00000447124 TMEM31Q5JXX7 168 aa23.06■■□□□ 1.28
SDC1-205ENST00000447124 SYCE2Q6PIF2 218 aa23.06■■□□□ 1.28
SDC1-205ENST00000447124 RSPH1Q8WYR4 309 aa23.06■■□□□ 1.28
SDC1-205ENST00000447124 IGSF21Q96ID5 467 aa23.06■■□□□ 1.28
SDC1-205ENST00000447124 NACC1Q96RE7 527 aa23.06■■□□□ 1.28
SDC1-205ENST00000447124 POLR3FQ9H1D9 316 aaPredicted RBP23.06■■□□□ 1.28
SDC1-205ENST00000447124 S1PR5Q9H228 398 aa23.06■■□□□ 1.28
SDC1-205ENST00000447124 RSAD1Q9HA92 442 aa23.06■■□□□ 1.28
SDC1-205ENST00000447124 DBR1Q9UK59 544 aaKnown RBP23.06■■□□□ 1.28
SDC1-205ENST00000447124 USP15Q9Y4E8 981 aaPredicted RBP23.06■■□□□ 1.28
SDC1-205ENST00000447124 ARID2Q68CP9 1835 aa23.05■■□□□ 1.28
SDC1-205ENST00000447124 CXCL14O95715 111 aa23.05■■□□□ 1.28
SDC1-205ENST00000447124 RPA1P27694 616 aa23.05■■□□□ 1.28
SDC1-205ENST00000447124 AXLP30530 894 aa23.05■■□□□ 1.28
SDC1-205ENST00000447124 TRAPPC10P48553 1259 aa23.05■■□□□ 1.28
SDC1-205ENST00000447124 ANKRD54Q6NXT1 300 aa23.05■■□□□ 1.28
SDC1-205ENST00000447124 LLGL2Q6P1M3 1020 aa23.05■■□□□ 1.28
SDC1-205ENST00000447124 POTEGQ6S5H5 508 aa23.05■■□□□ 1.28
SDC1-205ENST00000447124 TMEM169Q96HH4 297 aa23.05■■□□□ 1.28
SDC1-205ENST00000447124 VN1R3Q9BXE9 311 aa23.05■■□□□ 1.28
SDC1-205ENST00000447124 GBP3Q9H0R5 595 aa23.05■■□□□ 1.28
SDC1-205ENST00000447124 MIOSQ9NXC5 875 aa23.05■■□□□ 1.28
SDC1-205ENST00000447124 IPPQ9Y573 584 aa23.05■■□□□ 1.28
SDC1-205ENST00000447124 B4GALT5O43286 388 aa23.04■■□□□ 1.28
SDC1-205ENST00000447124 CLASP2O75122 1294 aaKnown RBP23.04■■□□□ 1.28
SDC1-205ENST00000447124 ERLIN2O94905 339 aa23.04■■□□□ 1.28
SDC1-205ENST00000447124 CD2BP2O95400 341 aaKnown RBP23.04■■□□□ 1.28
SDC1-205ENST00000447124 ARF4P18085 180 aaPredicted RBP23.04■■□□□ 1.28
SDC1-205ENST00000447124 RNASELQ05823 741 aaKnown RBP23.04■■□□□ 1.28
SDC1-205ENST00000447124 SMC1AQ14683 1233 aaKnown RBP23.04■■□□□ 1.28
SDC1-205ENST00000447124 PCBP1Q15365 356 aaKnown RBP eCLIP23.04■■□□□ 1.286e-7■■■■■ 46.7
SDC1-205ENST00000447124 DDX53Q86TM3 631 aaKnown RBP23.04■■□□□ 1.28
SDC1-205ENST00000447124 VPS52Q8N1B4 723 aa23.04■■□□□ 1.28
SDC1-205ENST00000447124 AUTS2Q8WXX7 1259 aa23.04■■□□□ 1.28
SDC1-205ENST00000447124 SUSD6Q92537 303 aa23.04■■□□□ 1.28
SDC1-205ENST00000447124 CCDC43Q96MW1 224 aaKnown RBP23.04■■□□□ 1.28
SDC1-205ENST00000447124 NFKBIZQ9BYH8 718 aa23.04■■□□□ 1.28
SDC1-205ENST00000447124 ZBP1Q9H171 429 aa23.04■■□□□ 1.28
SDC1-205ENST00000447124 CSRNP2Q9H175 543 aa23.04■■□□□ 1.28
SDC1-205ENST00000447124 HES2Q9Y543 173 aa23.04■■□□□ 1.28
SDC1-205ENST00000447124 PCDHB6Q9Y5E3 794 aa23.04■■□□□ 1.28
SDC1-205ENST00000447124 CNTNAP2Q9UHC6 1331 aa23.04■■□□□ 1.28
SDC1-205ENST00000447124 POMCP01189 267 aa23.03■■□□□ 1.28
SDC1-205ENST00000447124 ITGA4P13612 1032 aa23.03■■□□□ 1.28
SDC1-205ENST00000447124 ALADP13716 330 aa23.03■■□□□ 1.28
SDC1-205ENST00000447124 GNL2Q13823 731 aaKnown RBP23.03■■□□□ 1.28
SDC1-205ENST00000447124 NOTUMQ6P988 496 aa23.03■■□□□ 1.28
SDC1-205ENST00000447124 CDR2LQ86X02 465 aaPredicted RBP23.03■■□□□ 1.28
SDC1-205ENST00000447124 CNNM3Q8NE01 707 aa23.03■■□□□ 1.28
SDC1-205ENST00000447124 APOL5Q9BWW9 433 aa23.03■■□□□ 1.28
SDC1-205ENST00000447124 POLD4Q9HCU8 107 aa23.03■■□□□ 1.28
SDC1-205ENST00000447124 DCXO43602 365 aa23.02■■□□□ 1.28
SDC1-205ENST00000447124 CTSAP10619 480 aa23.02■■□□□ 1.28
SDC1-205ENST00000447124 FXR2P51116 673 aaKnown RBP eCLIP23.02■■□□□ 1.28
SDC1-205ENST00000447124 PADI6Q6TGC4 694 aa23.02■■□□□ 1.28
SDC1-205ENST00000447124 RNF135Q8IUD6 432 aa23.02■■□□□ 1.28
SDC1-205ENST00000447124 ERMNQ8TAM6 284 aa23.02■■□□□ 1.28
SDC1-205ENST00000447124 URGCPQ8TCY9 931 aa23.02■■□□□ 1.28
SDC1-205ENST00000447124 BSNDQ8WZ55 320 aa23.02■■□□□ 1.28
SDC1-205ENST00000447124 CCDC51Q96ER9 411 aa23.02■■□□□ 1.28
SDC1-205ENST00000447124 GAD1Q99259 594 aa23.02■■□□□ 1.28
SDC1-205ENST00000447124 KANSL3Q9P2N6 904 aa23.02■■□□□ 1.28
SDC1-205ENST00000447124 NOL7Q9UMY1 257 aaKnown RBP23.02■■□□□ 1.28
SDC1-205ENST00000447124 FSD2A1L4K1 749 aa23.01■■□□□ 1.27
SDC1-205ENST00000447124 LOC730098B7Z3J9 87 aa23.01■■□□□ 1.27
SDC1-205ENST00000447124 INPPL1O15357 1258 aa23.01■■□□□ 1.27
SDC1-205ENST00000447124 ALDH2P05091 517 aa23.01■■□□□ 1.27
SDC1-205ENST00000447124 CYP11B2P19099 503 aa23.01■■□□□ 1.27
SDC1-205ENST00000447124 PTGDRQ13258 359 aa23.01■■□□□ 1.27
SDC1-205ENST00000447124 IL17AQ16552 155 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms