RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 RAB17Q9H0T7 212 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 SLC12A6Q9UHW9 1150 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 DAAM1Q9Y4D1 1078 aa12.76□□□□□ -0.37
CD44-209ENST00000433892 NFIBO00712 420 aa12.75□□□□□ -0.37
CD44-209ENST00000433892 KIAA0754O94854 1291 aa12.75□□□□□ -0.37
CD44-209ENST00000433892 FAM107AO95990 144 aa12.75□□□□□ -0.37
CD44-209ENST00000433892 P4HBP07237 508 aaKnown RBP12.75□□□□□ -0.37
CD44-209ENST00000433892 VCAM1P19320 739 aa12.75□□□□□ -0.37
CD44-209ENST00000433892 RFX1P22670 979 aa12.75□□□□□ -0.37
CD44-209ENST00000433892 MYBPC2Q14324 1141 aa12.75□□□□□ -0.37
CD44-209ENST00000433892 DLGAP5Q15398 846 aa12.75□□□□□ -0.37
CD44-209ENST00000433892 KRT71Q3SY84 523 aa12.75□□□□□ -0.37
CD44-209ENST00000433892 C1orf220Q5T0J3 134 aa12.75□□□□□ -0.37
CD44-209ENST00000433892 DUPD1Q68J44 220 aa12.75□□□□□ -0.37
CD44-209ENST00000433892 FAM160B2Q86V87 743 aa12.75□□□□□ -0.37
CD44-209ENST00000433892 RHOT2Q8IXI1 618 aa12.75□□□□□ -0.37
CD44-209ENST00000433892 FLAD1Q8NFF5 587 aa12.75□□□□□ -0.37
CD44-209ENST00000433892 PLEKHO2Q8TD55 490 aa12.75□□□□□ -0.37
CD44-209ENST00000433892 KAT2BQ92831 832 aa12.75□□□□□ -0.37
CD44-209ENST00000433892 ACCSQ96QU6 501 aa12.75□□□□□ -0.37
CD44-209ENST00000433892 TMEM206Q9H813 350 aa12.75□□□□□ -0.37
CD44-209ENST00000433892 ACP6Q9NPH0 428 aa12.75□□□□□ -0.37
CD44-209ENST00000433892 HSPBP1Q9NZL4 362 aa12.75□□□□□ -0.37
CD44-209ENST00000433892 CNOT8Q9UFF9 292 aaKnown RBP12.75□□□□□ -0.37
CD44-209ENST00000433892 CCPG1Q9ULG6 757 aa12.75□□□□□ -0.37
CD44-209ENST00000433892 CNTNAP1P78357 1384 aa12.75□□□□□ -0.37
CD44-209ENST00000433892 MEFVO15553 781 aaPredicted RBP12.74□□□□□ -0.37
CD44-209ENST00000433892 DHX15O43143 795 aaKnown RBP12.74□□□□□ -0.37
CD44-209ENST00000433892 C21orf2O43822 256 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 SGPL1O95470 568 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 HMGB2P26583 209 aaKnown RBP12.74□□□□□ -0.37
CD44-209ENST00000433892 RARRES1P49788 294 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 MAGOHP61326 146 aaKnown RBP12.74□□□□□ -0.37
CD44-209ENST00000433892 GPC5P78333 572 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 IFFO1Q0D2I5 559 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 OTUD6BQ8N6M0 293 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 XXYLT1Q8NBI6 393 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 CNKSR1Q969H4 720 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 MAGOHBQ96A72 148 aaKnown RBP12.74□□□□□ -0.37
CD44-209ENST00000433892 C18orf8Q96DM3 657 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 FEM1BQ9UK73 627 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 ZBTB12Q9Y330 459 aaPredicted RBP12.74□□□□□ -0.37
CD44-209ENST00000433892 SNX24Q9Y343 169 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 GOLGA8IPA6NC78 632 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 GOLGA8JA6NMD2 632 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 ATMINO43313 823 aaPredicted RBP12.74□□□□□ -0.37
CD44-209ENST00000433892 PPFIA2O75334 1257 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 PLS3P13797 630 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 HSD17B4P51659 736 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 PLTPP55058 493 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 PPP2R2AP63151 447 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 MESDQ14696 234 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 EPC2Q52LR7 807 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 AGBL2Q5U5Z8 902 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 JAMLQ86YT9 394 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 NEK9Q8TD19 979 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 PCDHB18PQ96TA0 734 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 GPRC5CQ9NQ84 441 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 ZDHHC18Q9NUE0 388 aa12.74□□□□□ -0.37
CD44-209ENST00000433892 BACH1O14867 736 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 PLSCR1O15162 318 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 SLC16A4O15374 487 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 PLA2G6O60733 806 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 CAP2P40123 477 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 SPP2Q13103 211 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 PPP2R5EQ16537 467 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 RSBN1LQ6PCB5 846 aaPredicted RBP12.73□□□□□ -0.37
CD44-209ENST00000433892 HAUS6Q7Z4H7 955 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 SPATS2Q86XZ4 545 aaKnown RBP12.73□□□□□ -0.37
CD44-209ENST00000433892 TXLNGYQ9BZA5 131 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 HOMER2Q9NSB8 354 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 ZNF536O15090 1300 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 GMNCA6NCL1 334 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 KIAA0391O15091 583 aaKnown RBP12.73□□□□□ -0.37
CD44-209ENST00000433892 SHBGP04278 402 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 ICAM1P05362 532 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 CHRNB2P17787 502 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 COMTP21964 271 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 QARSP47897 775 aaKnown RBP12.73□□□□□ -0.37
CD44-209ENST00000433892 MXI1P50539 228 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 HADHBP55084 474 aaKnown RBP12.73□□□□□ -0.37
CD44-209ENST00000433892 PEX3P56589 373 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 MAP2K1Q02750 393 aaPredicted RBP12.73□□□□□ -0.37
CD44-209ENST00000433892 IFT88Q13099 833 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 TNIP1Q15025 636 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 TKFCQ3LXA3 575 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 FBXW10Q5XX13 1052 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 C11orf63Q6NUN7 778 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 MICALCLQ6ZW33 695 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 NOP9Q86U38 636 aaKnown RBP12.73□□□□□ -0.37
CD44-209ENST00000433892 SLC47A2Q86VL8 602 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 ZDHHC14Q8IZN3 488 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 CPXCR1Q8N123 301 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 PPM1KQ8N3J5 372 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 OGFOD1Q8N543 542 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 UBL4BQ8N7F7 174 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 PRELID2Q8N945 189 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 FBXO25Q8TCJ0 367 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 EPS8L1Q8TE68 723 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 CYFIP2Q96F07 1278 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms