RNA–Protein interactions for RNA: ENST00000430200.1

HDAC4-202, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 578 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-202ENST00000430200 PPM1AP35813 382 aa13.14□□□□□ -0.31
HDAC4-202ENST00000430200 CSPP1Q1MSJ5 1256 aa13.14□□□□□ -0.31
HDAC4-202ENST00000430200 NOMO2Q5JPE7 1267 aa13.14□□□□□ -0.31
HDAC4-202ENST00000430200 POTEGQ6S5H5 508 aa13.14□□□□□ -0.31
HDAC4-202ENST00000430200 BSNDQ8WZ55 320 aa13.14□□□□□ -0.31
HDAC4-202ENST00000430200 NAP1L4Q99733 375 aaKnown RBP13.14□□□□□ -0.31
HDAC4-202ENST00000430200 MRPL9Q9BYD2 267 aaKnown RBP13.14□□□□□ -0.31
HDAC4-202ENST00000430200 GBP3Q9H0R5 595 aa13.14□□□□□ -0.31
HDAC4-202ENST00000430200 BRMS1Q9HCU9 246 aa13.14□□□□□ -0.31
HDAC4-202ENST00000430200 MARCH5Q9NX47 278 aa13.14□□□□□ -0.31
HDAC4-202ENST00000430200 PCDHA12Q9UN75 941 aa13.14□□□□□ -0.31
HDAC4-202ENST00000430200 HCFC2Q9Y5Z7 792 aa13.14□□□□□ -0.31
HDAC4-202ENST00000430200 DMDP11532 3685 aa13.14□□□□□ -0.31
HDAC4-202ENST00000430200 ANK1P16157 1881 aa13.13□□□□□ -0.31
HDAC4-202ENST00000430200 USO1O60763 962 aaKnown RBP13.13□□□□□ -0.31
HDAC4-202ENST00000430200 GALTP07902 379 aa13.13□□□□□ -0.31
HDAC4-202ENST00000430200 WEE2P0C1S8 567 aa13.13□□□□□ -0.31
HDAC4-202ENST00000430200 SP100P23497 879 aaPredicted RBP13.13□□□□□ -0.31
HDAC4-202ENST00000430200 ARL2P36404 184 aa13.13□□□□□ -0.31
HDAC4-202ENST00000430200 PTENP60484 403 aa13.13□□□□□ -0.31
HDAC4-202ENST00000430200 ECM1Q16610 540 aa13.13□□□□□ -0.31
HDAC4-202ENST00000430200 ANKRD54Q6NXT1 300 aa13.13□□□□□ -0.31
HDAC4-202ENST00000430200 GLB1LQ6UWU2 654 aa13.13□□□□□ -0.31
HDAC4-202ENST00000430200 TMEM184AQ6ZMB5 413 aa13.13□□□□□ -0.31
HDAC4-202ENST00000430200 SRGAP1Q7Z6B7 1085 aa13.13□□□□□ -0.31
HDAC4-202ENST00000430200 MRPL10Q7Z7H8 261 aaKnown RBP13.13□□□□□ -0.31
HDAC4-202ENST00000430200 IFNLR1Q8IU57 520 aaPredicted RBP13.13□□□□□ -0.31
HDAC4-202ENST00000430200 PPP2R3CQ969Q6 453 aa13.13□□□□□ -0.31
HDAC4-202ENST00000430200 IGSF21Q96ID5 467 aa13.13□□□□□ -0.31
HDAC4-202ENST00000430200 ZFP42Q96MM3 310 aa13.13□□□□□ -0.31
HDAC4-202ENST00000430200 JPH2Q9BR39 696 aaPredicted RBP13.13□□□□□ -0.31
HDAC4-202ENST00000430200 POLR3FQ9H1D9 316 aaPredicted RBP13.13□□□□□ -0.31
HDAC4-202ENST00000430200 CXCL16Q9H2A7 254 aa13.13□□□□□ -0.31
HDAC4-202ENST00000430200 NXF3Q9H4D5 531 aaKnown RBP13.13□□□□□ -0.31
HDAC4-202ENST00000430200 RNF216Q9NWF9 866 aaPredicted RBP13.13□□□□□ -0.31
HDAC4-202ENST00000430200 CACNG4Q9UBN1 327 aa13.13□□□□□ -0.31
HDAC4-202ENST00000430200 LIMCH1Q9UPQ0 1083 aa13.13□□□□□ -0.31
HDAC4-202ENST00000430200 USP20Q9Y2K6 914 aa13.13□□□□□ -0.31
HDAC4-202ENST00000430200 MARCH6O60337 910 aa13.12□□□□□ -0.31
HDAC4-202ENST00000430200 CLASP2O75122 1294 aaKnown RBP13.12□□□□□ -0.31
HDAC4-202ENST00000430200 POMCP01189 267 aa13.12□□□□□ -0.31
HDAC4-202ENST00000430200 EPCAMP16422 314 aa13.12□□□□□ -0.31
HDAC4-202ENST00000430200 ARF4P18085 180 aaPredicted RBP13.12□□□□□ -0.31
HDAC4-202ENST00000430200 PLA2G5P39877 138 aa13.12□□□□□ -0.31
HDAC4-202ENST00000430200 MLH1P40692 756 aa13.12□□□□□ -0.31
HDAC4-202ENST00000430200 TECP42680 631 aa13.12□□□□□ -0.31
HDAC4-202ENST00000430200 RAB27AP51159 221 aa13.12□□□□□ -0.31
HDAC4-202ENST00000430200 CBX2Q14781 532 aaPredicted RBP13.12□□□□□ -0.31
HDAC4-202ENST00000430200 HERC4Q5GLZ8 1057 aaPredicted RBP13.12□□□□□ -0.31
HDAC4-202ENST00000430200 HFE2Q6ZVN8 426 aa13.12□□□□□ -0.31
HDAC4-202ENST00000430200 TMC7Q7Z402 723 aa13.12□□□□□ -0.31
HDAC4-202ENST00000430200 CATSPER3Q86XQ3 398 aa13.12□□□□□ -0.31
HDAC4-202ENST00000430200 VPS52Q8N1B4 723 aa13.12□□□□□ -0.31
HDAC4-202ENST00000430200 C4orf32Q8N8J7 132 aa13.12□□□□□ -0.31
HDAC4-202ENST00000430200 MRPL43Q8N983 215 aaKnown RBP13.12□□□□□ -0.31
HDAC4-202ENST00000430200 C8orf76Q96K31 380 aa13.12□□□□□ -0.31
HDAC4-202ENST00000430200 CDCA3Q99618 268 aaPredicted RBP13.12□□□□□ -0.31
HDAC4-202ENST00000430200 RSAD1Q9HA92 442 aa13.12□□□□□ -0.31
HDAC4-202ENST00000430200 MIOSQ9NXC5 875 aa13.12□□□□□ -0.31
HDAC4-202ENST00000430200 FAM50BQ9Y247 325 aa13.12□□□□□ -0.31
HDAC4-202ENST00000430200 PPME1Q9Y570 386 aa13.12□□□□□ -0.31
HDAC4-202ENST00000430200 IPPQ9Y573 584 aa13.12□□□□□ -0.31
HDAC4-202ENST00000430200 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.11□□□□□ -0.31
HDAC4-202ENST00000430200 PRR33A8MZF0 331 aa13.11□□□□□ -0.31
HDAC4-202ENST00000430200 GAS2O43903 313 aaKnown RBP13.11□□□□□ -0.31
HDAC4-202ENST00000430200 DKC1O60832 514 aaKnown RBP eCLIP13.11□□□□□ -0.31
HDAC4-202ENST00000430200 BAG4O95429 457 aaKnown RBP13.11□□□□□ -0.31
HDAC4-202ENST00000430200 EFEMP2O95967 443 aa13.11□□□□□ -0.31
HDAC4-202ENST00000430200 OR52Z1P0C646 297 aa13.11□□□□□ -0.31
HDAC4-202ENST00000430200 NCLP19338 710 aaKnown RBP13.11□□□□□ -0.31
HDAC4-202ENST00000430200 TOB1P50616 345 aaPredicted RBP13.11□□□□□ -0.31
HDAC4-202ENST00000430200 CDC42EP1Q00587 391 aa13.11□□□□□ -0.31
HDAC4-202ENST00000430200 TRIM29Q14134 588 aa13.11□□□□□ -0.31
HDAC4-202ENST00000430200 SMC1AQ14683 1233 aaKnown RBP13.11□□□□□ -0.31
HDAC4-202ENST00000430200 PTPN14Q15678 1187 aa13.11□□□□□ -0.31
HDAC4-202ENST00000430200 ZNF174Q15697 407 aa13.11□□□□□ -0.31
HDAC4-202ENST00000430200 MAEAQ7L5Y9 396 aa13.11□□□□□ -0.31
HDAC4-202ENST00000430200 C12orf76Q8N812 135 aaPredicted RBP13.11□□□□□ -0.31
HDAC4-202ENST00000430200 GSTCDQ8NEC7 633 aa13.11□□□□□ -0.31
HDAC4-202ENST00000430200 FBXO18Q8NFZ0 1043 aa13.11□□□□□ -0.31
HDAC4-202ENST00000430200 TCP11Q8WWU5 503 aa13.11□□□□□ -0.31
HDAC4-202ENST00000430200 TMEM169Q96HH4 297 aa13.11□□□□□ -0.31
HDAC4-202ENST00000430200 INO80BQ9C086 356 aaPredicted RBP13.11□□□□□ -0.31
HDAC4-202ENST00000430200 SMOC2Q9H3U7 446 aa13.11□□□□□ -0.31
HDAC4-202ENST00000430200 POMKQ9H5K3 350 aa13.11□□□□□ -0.31
HDAC4-202ENST00000430200 POLD4Q9HCU8 107 aa13.11□□□□□ -0.31
HDAC4-202ENST00000430200 NGRNQ9NPE2 291 aaKnown RBP13.11□□□□□ -0.31
HDAC4-202ENST00000430200 ANKEF1Q9NU02 776 aa13.11□□□□□ -0.31
HDAC4-202ENST00000430200 NOTCH4Q99466 2003 aa13.1□□□□□ -0.31
HDAC4-202ENST00000430200 COL4A3Q01955 1670 aa13.1□□□□□ -0.31
HDAC4-202ENST00000430200 PP2D1A8MPX8 630 aa13.1□□□□□ -0.31
HDAC4-202ENST00000430200 INO80B-WBP1J3KQ70 363 aa13.1□□□□□ -0.31
HDAC4-202ENST00000430200 INPPL1O15357 1258 aa13.1□□□□□ -0.31
HDAC4-202ENST00000430200 DGAT1O75907 488 aa13.1□□□□□ -0.31
HDAC4-202ENST00000430200 CTSAP10619 480 aa13.1□□□□□ -0.31
HDAC4-202ENST00000430200 SCNN1GP51170 649 aa13.1□□□□□ -0.31
HDAC4-202ENST00000430200 DSC1Q08554 894 aa13.1□□□□□ -0.31
HDAC4-202ENST00000430200 IL17AQ16552 155 aa13.1□□□□□ -0.31
HDAC4-202ENST00000430200 TTC38Q5R3I4 469 aa13.1□□□□□ -0.31
HDAC4-202ENST00000430200 CDCA2Q69YH5 1023 aaPredicted RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms