RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 HSPBP1Q9NZL4 362 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 CTTNBP2NLQ9P2B4 639 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 FEM1BQ9UK73 627 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 USTQ9Y2C2 406 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 FRMD3A2A2Y4 597 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 HGSO14964 777 aaPredicted RBP9.07□□□□□ -0.96
CD44-208ENST00000428726 ZBED4O75132 1171 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 RGS20O76081 388 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 MMEP08473 750 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 CD58P19256 250 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 RPL13P26373 211 aaKnown RBP9.07□□□□□ -0.96
CD44-208ENST00000428726 CIITAP33076 1130 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 PTGER2P43116 358 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 RPS6KA1Q15418 735 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 TMEM132AQ24JP5 1023 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 SCARA5Q6ZMJ2 495 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 MAATS1Q7Z4T9 603 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 METTL13Q8N6R0 699 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 SLC35G2Q8TBE7 412 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 CPA5Q8WXQ8 436 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 TAF4BQ92750 862 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 MRRFQ96E11 262 aaKnown RBP9.07□□□□□ -0.96
CD44-208ENST00000428726 NUCKS1Q9H1E3 243 aaKnown RBP9.07□□□□□ -0.96
CD44-208ENST00000428726 TCRBV7S2A1N4TA0A589 114 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 TLDC2A0PJX2 215 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 O00370 1275 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 PDXKO00764 312 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 PIAS1O75925 651 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 LCA5LO95447 670 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 FGGP02679 453 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 TNNI1P19237 187 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 ADSSP30520 456 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 ACTN2P35609 894 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 MARSP56192 900 aaKnown RBP9.07□□□□□ -0.96
CD44-208ENST00000428726 CKAP4Q07065 602 aaKnown RBP9.07□□□□□ -0.96
CD44-208ENST00000428726 SYCP2LQ5T4T6 812 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 CCDC25Q86WR0 208 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 RPUSD2Q8IZ73 545 aaKnown RBP9.07□□□□□ -0.96
CD44-208ENST00000428726 RPGRIP1Q96KN7 1286 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 HEMGNQ9BXL5 484 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 A1CFQ9NQ94 594 aaKnown RBP9.07□□□□□ -0.96
CD44-208ENST00000428726 MYH11P35749 1972 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 TTI1O43156 1089 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 FTLP02792 175 aaPredicted RBP9.06□□□□□ -0.96
CD44-208ENST00000428726 PTPRAP18433 802 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 NPTX2P47972 431 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 PPATQ06203 517 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 EDRF1Q3B7T1 1238 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 EPM2AIP1Q7L775 607 aaPredicted RBP9.06□□□□□ -0.96
CD44-208ENST00000428726 KCTD17Q8N5Z5 321 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 GOLGA6L1Q8N7Z2 621 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 PWWP2AQ96N64 755 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 SLC38A10Q9HBR0 1119 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 KMT5AQ9NQR1 393 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 PXMP2Q9NR77 195 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 FAM184BQ9ULE4 1060 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 COG5Q9UP83 839 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 PIK3CDO00329 1044 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 DAPK3O43293 454 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 H2AFZP0C0S5 128 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 CNGA1P29973 690 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 HOXD11P31277 338 aaPredicted RBP9.06□□□□□ -0.96
CD44-208ENST00000428726 VAMP7P51809 220 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 BFSP1Q12934 665 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 TNIP1Q15025 636 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 CCNI2Q6ZMN8 369 aaPredicted RBP9.06□□□□□ -0.96
CD44-208ENST00000428726 CAPN12Q6ZSI9 719 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 H2AFVQ71UI9 128 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 LRRN4Q8WUT4 740 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 NEUROG2Q9H2A3 272 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 LARSQ9P2J5 1176 aaKnown RBP9.06□□□□□ -0.96
CD44-208ENST00000428726 CD2APQ9Y5K6 639 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 USP34Q70CQ2 3546 aa9.06□□□□□ -0.96
CD44-208ENST00000428726 SSU72P8A0A1W2PR75 194 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 F8VZ95 297 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 KRIT1O00522 736 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 MAP2K7O14733 419 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 PPP1R12BO60237 982 aaPredicted RBP9.05□□□□□ -0.96
CD44-208ENST00000428726 P4HBP07237 508 aaKnown RBP9.05□□□□□ -0.96
CD44-208ENST00000428726 BACE1P56817 501 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 TMEM62Q0P6H9 643 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 MAP9Q49MG5 647 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 ZC3H3Q8IXZ2 948 aaKnown RBP9.05□□□□□ -0.96
CD44-208ENST00000428726 ZNF280CQ8ND82 737 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 SYN2Q92777 582 aaPredicted RBP9.05□□□□□ -0.96
CD44-208ENST00000428726 PCDHB18PQ96TA0 734 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 POLR3CQ9BUI4 534 aaPredicted RBP9.05□□□□□ -0.96
CD44-208ENST00000428726 TARS2Q9BW92 718 aaKnown RBP9.05□□□□□ -0.96
CD44-208ENST00000428726 UBXN6Q9BZV1 441 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 RASSF4Q9H2L5 321 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 ERVK-5Q9HDB9 667 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 TRAF3IP3Q9Y228 551 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 IRF6O14896 467 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 ATP2C2O75185 946 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 SYF2O95926 243 aaKnown RBP9.05□□□□□ -0.96
CD44-208ENST00000428726 POTEJP0CG39 1038 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 MCM3P25205 808 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 SLCO1A2P46721 670 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 CCT5P48643 541 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 LIG3P49916 1009 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms