RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 GCKP35557 465 aa11.45□□□□□ -0.58
TCOF1-204ENST00000427724 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.45□□□□□ -0.58
TCOF1-204ENST00000427724 CTU1Q7Z7A3 348 aaKnown RBP11.45□□□□□ -0.58
TCOF1-204ENST00000427724 CCDC25Q86WR0 208 aa11.45□□□□□ -0.58
TCOF1-204ENST00000427724 MAP3K14Q99558 947 aa11.45□□□□□ -0.58
TCOF1-204ENST00000427724 NHEJ1Q9H9Q4 299 aaPredicted RBP11.45□□□□□ -0.58
TCOF1-204ENST00000427724 RCAN1P53805 252 aa11.45□□□□□ -0.58
TCOF1-204ENST00000427724 MXD4Q14582 209 aaPredicted RBP11.45□□□□□ -0.58
TCOF1-204ENST00000427724 XRRA1Q6P2D8 792 aa11.45□□□□□ -0.58
TCOF1-204ENST00000427724 SLC30A10Q6XR72 485 aa11.45□□□□□ -0.58
TCOF1-204ENST00000427724 GSPT2Q8IYD1 628 aaKnown RBP11.45□□□□□ -0.58
TCOF1-204ENST00000427724 PGBD3Q8N328 593 aa11.45□□□□□ -0.58
TCOF1-204ENST00000427724 SAAL1Q96ER3 474 aa11.45□□□□□ -0.58
TCOF1-204ENST00000427724 HYOU1Q9Y4L1 999 aa11.45□□□□□ -0.58
TCOF1-204ENST00000427724 ACTN4O43707 911 aaKnown RBP11.44□□□□□ -0.58
TCOF1-204ENST00000427724 KPNA6O60684 536 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 POLR2BP30876 1174 aaKnown RBP11.44□□□□□ -0.58
TCOF1-204ENST00000427724 VEGFBP49765 207 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 TOB1P50616 345 aaPredicted RBP11.44□□□□□ -0.58
TCOF1-204ENST00000427724 PRKCZQ05513 592 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 TROAPQ12815 778 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 TEX2Q8IWB9 1127 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 GPRASP2Q96D09 838 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 WDR18Q9BV38 432 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 KLK14Q9P0G3 267 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 SLC12A6Q9UHW9 1150 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 MON2Q7Z3U7 1717 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 PEAK1Q9H792 1746 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 ATP8B3O60423 1300 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 VTNP04004 478 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 SRGAP2BP0DMP2 458 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 HSPA6P17066 643 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 VSNL1P62760 191 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 ARL6IP4Q66PJ3 421 aaKnown RBP11.44□□□□□ -0.58
TCOF1-204ENST00000427724 HAUS6Q7Z4H7 955 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 TMEM199Q8N511 208 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 ARFGAP2Q8N6H7 521 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 DHTKD1Q96HY7 919 aaPredicted RBP11.44□□□□□ -0.58
TCOF1-204ENST00000427724 OSMRQ99650 979 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 SLC28A3Q9HAS3 691 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 ZNF446Q9NWS9 450 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.44□□□□□ -0.58
TCOF1-204ENST00000427724 FAM169AQ9Y6X4 670 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 ZC3H4Q9UPT8 1303 aaKnown RBP11.44□□□□□ -0.58
TCOF1-204ENST00000427724 THAP12O43422 761 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 MOCS3O95396 460 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 PTGER2P43116 358 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 FKBP3Q00688 224 aaKnown RBP11.44□□□□□ -0.58
TCOF1-204ENST00000427724 MYL7Q01449 175 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 SLC7A5Q01650 507 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 PTGISQ16647 500 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 DNAJB3Q8WWF6 145 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 COPS5Q92905 334 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 SLC24A3Q9HC58 644 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 VTA1Q9NP79 307 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 TRIM10Q9UDY6 481 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 CPSF3Q9UKF6 684 aaKnown RBP11.44□□□□□ -0.58
TCOF1-204ENST00000427724 ODF2LQ9ULJ1 636 aa11.44□□□□□ -0.58
TCOF1-204ENST00000427724 SMIM22K7EJ46 135 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 GPR182O15218 404 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 CCNE1P24864 410 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 ALDH5A1P51649 535 aaPredicted RBP11.43□□□□□ -0.58
TCOF1-204ENST00000427724 EFNA5P52803 228 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 EXOC3L4Q17RC7 722 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 IQSEC1Q6DN90 963 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 IFNL1Q8IU54 200 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 GMCL1P1Q8NEA9 526 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 N4BP2L2Q92802 583 aaPredicted RBP11.43□□□□□ -0.58
TCOF1-204ENST00000427724 ANAPC4Q9UJX5 808 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 PITPNM2Q9BZ72 1349 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 HGSO14964 777 aaPredicted RBP11.43□□□□□ -0.58
TCOF1-204ENST00000427724 BUB1BO60566 1050 aaPredicted RBP11.43□□□□□ -0.58
TCOF1-204ENST00000427724 TLR2O60603 784 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 HIP1RO75146 1068 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 INHAP05111 366 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 TCP1P17987 556 aaKnown RBP11.43□□□□□ -0.58
TCOF1-204ENST00000427724 GUCY2CP25092 1073 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 ZBED6P86452 979 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 IFT88Q13099 833 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 EMC2Q15006 297 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 NTRK3Q16288 839 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 ANKRD23Q86SG2 305 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 SLAIN1Q8ND83 568 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 FAM217BQ9NTX9 383 aaPredicted RBP11.43□□□□□ -0.58
TCOF1-204ENST00000427724 NKRFO15226 690 aaKnown RBP eCLIP11.43□□□□□ -0.58
TCOF1-204ENST00000427724 ARP10275 920 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 INSRRP14616 1297 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 EIF4A3P38919 411 aaKnown RBP11.43□□□□□ -0.58
TCOF1-204ENST00000427724 ZNF280AP59817 542 aaPredicted RBP11.43□□□□□ -0.58
TCOF1-204ENST00000427724 BSPRYQ5W0U4 402 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 FBXW10Q5XX13 1052 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 RIOX2Q8IUF8 465 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 PORCNQ9H237 461 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 CXorf56Q9H5V9 222 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 MAGEF1Q9HAY2 307 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 PXMP2Q9NR77 195 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 LMCD1Q9NZU5 365 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 CHD2O14647 1828 aaKnown RBP11.43□□□□□ -0.58
TCOF1-204ENST00000427724 PDS5AQ29RF7 1337 aaKnown RBP11.43□□□□□ -0.58
TCOF1-204ENST00000427724 LGALS16A8MUM7 142 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms