RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 AGGF1Q8N302 714 aaeCLIP11.5□□□□□ -0.57
USP54-204ENST00000422491 TEKT4Q8WW24 435 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 TMEM237Q96Q45 408 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 GPR88Q9GZN0 384 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 PIDD1Q9HB75 910 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 METTL14Q9HCE5 456 aaKnown RBP11.5□□□□□ -0.57
USP54-204ENST00000422491 KCNK9Q9NPC2 374 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 NIP7Q9Y221 180 aaKnown RBP eCLIP11.5□□□□□ -0.57
USP54-204ENST00000422491 MIF4GDA9UHW6 222 aaKnown RBP11.5□□□□□ -0.57
USP54-204ENST00000422491 PDXKO00764 312 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 ACSL3O95573 720 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 EYA4O95677 639 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 TTLL1O95922 423 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 PDHA1P08559 390 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 CNGA1P29973 690 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 TNNI2P48788 182 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 CCDC25Q86WR0 208 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 PALB2Q86YC2 1186 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 SH3RF3Q8TEJ3 882 aaPredicted RBP11.5□□□□□ -0.57
USP54-204ENST00000422491 GRAMD1AQ96CP6 724 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 MXD3Q9BW11 206 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 TAOK3Q9H2K8 898 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 ZHX3Q9H4I2 956 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 ANKRD62A6NC57 917 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 SLC16A3O15427 465 aaKnown RBP11.5□□□□□ -0.57
USP54-204ENST00000422491 ATP5HO75947 161 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 GGPS1O95749 300 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 BRAFP15056 766 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 TAC1P20366 129 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 COILP38432 576 aaPredicted RBP11.5□□□□□ -0.57
USP54-204ENST00000422491 C11orf63Q6NUN7 778 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 INTS5Q6P9B9 1019 aaKnown RBP11.5□□□□□ -0.57
USP54-204ENST00000422491 MTHFD1LQ6UB35 978 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 C7orf43Q8WVR3 580 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 INPP5DQ92835 1189 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 ZSWIM1Q9BR11 485 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 STK33Q9BYT3 514 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 ASTN1O14525 1302 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 TCRBV7S2A1N4TA0A589 114 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 CALUO43852 315 aaPredicted RBP11.49□□□□□ -0.57
USP54-204ENST00000422491 BAG3O95817 575 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 NR3C1P04150 777 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 MYBL1P10243 752 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 STX2P32856 288 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 PTDSS1P48651 473 aaKnown RBP11.49□□□□□ -0.57
USP54-204ENST00000422491 CLK2P49760 499 aaKnown RBP11.49□□□□□ -0.57
USP54-204ENST00000422491 POLGP54098 1239 aaPredicted RBP11.49□□□□□ -0.57
USP54-204ENST00000422491 YARSP54577 528 aaKnown RBP11.49□□□□□ -0.57
USP54-204ENST00000422491 KLC1Q07866 573 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 DRAP1Q14919 205 aaPredicted RBP11.49□□□□□ -0.57
USP54-204ENST00000422491 SIX1Q15475 284 aaPredicted RBP11.49□□□□□ -0.57
USP54-204ENST00000422491 FAM136AQ96C01 138 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 ERP27Q96DN0 273 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 IFT43Q96FT9 208 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 BORCS6Q96GS4 357 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 NUDCD1Q96RS6 583 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 RPS6KC1Q96S38 1066 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 DHX36Q9H2U1 1008 aaKnown RBP11.49□□□□□ -0.57
USP54-204ENST00000422491 CHKBQ9Y259 395 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 PTPN22Q9Y2R2 807 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 FRMPD4Q14CM0 1322 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 SPATA31A1Q5TZJ5 1347 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 NAV1Q8NEY1 1877 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 FAM170AA1A519 330 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 USP17L5A8MUK1 530 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 KRT18P05783 430 aaKnown RBP11.49□□□□□ -0.57
USP54-204ENST00000422491 SP100P23497 879 aaPredicted RBP11.49□□□□□ -0.57
USP54-204ENST00000422491 TARSP26639 723 aaKnown RBP11.49□□□□□ -0.57
USP54-204ENST00000422491 HIBADHP31937 336 aaKnown RBP11.49□□□□□ -0.57
USP54-204ENST00000422491 FOXN2P32314 431 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 GIT2Q14161 759 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 CTTNQ14247 550 aaKnown RBP11.49□□□□□ -0.57
USP54-204ENST00000422491 PDCD2Q16342 344 aaPredicted RBP11.49□□□□□ -0.57
USP54-204ENST00000422491 UBE2SQ16763 222 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 SFR1Q86XK3 245 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 DZIP1Q86YF9 867 aaKnown RBP11.49□□□□□ -0.57
USP54-204ENST00000422491 RHOT2Q8IXI1 618 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 CYP4X1Q8N118 509 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 UBL4BQ8N7F7 174 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 NEDD1Q8NHV4 660 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 SLC7A6OSQ96CW6 309 aaPredicted RBP11.49□□□□□ -0.57
USP54-204ENST00000422491 TYW1Q9NV66 732 aaKnown RBP11.49□□□□□ -0.57
USP54-204ENST00000422491 TFCP2L1Q9NZI6 479 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 WDR35Q9P2L0 1181 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 JAG2Q9Y219 1238 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 C2CD2Q9Y426 696 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 PASKQ96RG2 1323 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 C10orf71Q711Q0 1435 aa11.49□□□□□ -0.57
USP54-204ENST00000422491 MED24O75448 989 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 TCEA3O75764 348 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 ALDH3A1P30838 453 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 RFC4P35249 363 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 BMT2Q1RMZ1 405 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 PPP1R15BQ5SWA1 713 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 TMEM154Q6P9G4 183 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 RHBDF2Q6PJF5 856 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 ARHGEF18Q6ZSZ5 1173 aa11.48□□□□□ -0.57
USP54-204ENST00000422491 INTS8Q75QN2 995 aaKnown RBP11.48□□□□□ -0.57
USP54-204ENST00000422491 APBB1IPQ7Z5R6 666 aaPredicted RBP11.48□□□□□ -0.57
USP54-204ENST00000422491 ADGRA3Q8IWK6 1321 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms