RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 SSC5DA1L4H1 1573 aa9.11□□□□□ -0.95
USP54-203ENST00000418501 LRRC53A6NM62 1247 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 TNPO2O14787 897 aaKnown RBP9.1□□□□□ -0.95
USP54-203ENST00000418501 ERLIN2O94905 339 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 CNGA1P29973 690 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 USP8P40818 1118 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 ZC2HC1CQ53FD0 456 aaPredicted RBP9.1□□□□□ -0.95
USP54-203ENST00000418501 GPAT2Q6NUI2 795 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 APTXQ7Z2E3 356 aaKnown RBP9.1□□□□□ -0.95
USP54-203ENST00000418501 CCDC60Q8IWA6 550 aaPredicted RBP9.1□□□□□ -0.95
USP54-203ENST00000418501 SUCLA2Q9P2R7 463 aaPredicted RBP9.1□□□□□ -0.95
USP54-203ENST00000418501 CEP83Q9Y592 693 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 ASTN1O14525 1302 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 LGR5O75473 907 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 H2AFZP0C0S5 128 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 EIF4A3P38919 411 aaKnown RBP9.1□□□□□ -0.95
USP54-203ENST00000418501 SNX16P57768 344 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 BMS1Q14692 1282 aaKnown RBP9.1□□□□□ -0.95
USP54-203ENST00000418501 SNRNP35Q16560 246 aaKnown RBP9.1□□□□□ -0.95
USP54-203ENST00000418501 KLHDC7AQ5VTJ3 777 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 MOB2Q70IA6 237 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 H2AFVQ71UI9 128 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 GPR142Q7Z601 462 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 RDH13Q8NBN7 331 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 GOLGA1Q92805 767 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 ANKRD36BP1Q96IX9 119 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 MED15Q96RN5 788 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 CRACR2AQ9BSW2 395 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 SIK3Q9Y2K2 1263 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 IL18RAPO95256 599 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 PGK2P07205 417 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 TCP1P17987 556 aaKnown RBP9.1□□□□□ -0.95
USP54-203ENST00000418501 MKRN3Q13064 507 aaKnown RBP9.1□□□□□ -0.95
USP54-203ENST00000418501 MAP9Q49MG5 647 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 ANO5Q75V66 913 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 GOLGA6L1Q8N7Z2 621 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 PCIF1Q9H4Z3 704 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 GPBP1L1Q9HC44 474 aaPredicted RBP9.1□□□□□ -0.95
USP54-203ENST00000418501 APEX2Q9UBZ4 518 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 PCDHA13Q9Y5I0 950 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 AKAP3O75969 853 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 CYP2C8P10632 490 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 UCHL3P15374 230 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 NOP2P46087 812 aaKnown RBP9.1□□□□□ -0.95
USP54-203ENST00000418501 POU5F1Q01860 360 aaKnown RBP9.1□□□□□ -0.95
USP54-203ENST00000418501 POU5F1BQ06416 359 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 C17orf53Q8N3J3 647 aaPredicted RBP9.1□□□□□ -0.95
USP54-203ENST00000418501 FBXL13Q8NEE6 735 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 PPTC7Q8NI37 304 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 TINF2Q9BSI4 451 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 DNAJC12Q9UKB3 198 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 AKT3Q9Y243 479 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 MYH7BA7E2Y1 1941 aa9.1□□□□□ -0.95
USP54-203ENST00000418501 SOX5P35711 763 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 PDE6CP51160 858 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 MAP2K5Q13163 448 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 LIN9Q5TKA1 542 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 CD302Q8IX05 232 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 TMEM161BQ8NDZ6 487 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 NAP1L3Q99457 506 aaPredicted RBP9.09□□□□□ -0.95
USP54-203ENST00000418501 DHX33Q9H6R0 707 aaKnown RBP9.09□□□□□ -0.95
USP54-203ENST00000418501 EFCC1Q9HA90 598 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 AIPL1Q9NZN9 384 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 INO80B-WBP1J3KQ70 363 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 ADCY3O60266 1144 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 PRKCBP05771 671 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 ARID5AQ03989 594 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 FBXO16Q8IX29 292 aaPredicted RBP9.09□□□□□ -0.95
USP54-203ENST00000418501 LRRC15Q8TF66 581 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 SLC35C1Q96A29 364 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 EEF2KMTQ96G04 330 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 GPR20Q99678 358 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 MIS12Q9H081 205 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 DMAC2Q9NW81 257 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 LOXHD1Q8IVV2 1947 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 ATP8B3O60423 1300 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 DNAJC25-GNG10A0A024R161 153 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 TMEM191BP0C7N4 346 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 ATF7P17544 494 aaPredicted RBP9.09□□□□□ -0.95
USP54-203ENST00000418501 PIK3CAP42336 1068 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 YARSP54577 528 aaKnown RBP9.09□□□□□ -0.95
USP54-203ENST00000418501 PTK2Q05397 1052 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 TOGARAM2Q6ZUX3 1019 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 BRI3BPQ8WY22 251 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 CCDC127Q96BQ5 260 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 DESI2Q9BSY9 194 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 GCOM2Q9BZD3 368 aaPredicted RBP9.09□□□□□ -0.95
USP54-203ENST00000418501 Q9Y3F1 56 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 JRKLQ9Y4A0 524 aa9.09□□□□□ -0.95
USP54-203ENST00000418501 TGFB1I1O43294 461 aa9.08□□□□□ -0.96
USP54-203ENST00000418501 SORBS3O60504 671 aa9.08□□□□□ -0.96
USP54-203ENST00000418501 CNMDO75829 334 aa9.08□□□□□ -0.96
USP54-203ENST00000418501 PPFIA1Q13136 1202 aa9.08□□□□□ -0.96
USP54-203ENST00000418501 PRPF4BQ13523 1007 aaKnown RBP9.08□□□□□ -0.96
USP54-203ENST00000418501 ACVR2BQ13705 512 aa9.08□□□□□ -0.96
USP54-203ENST00000418501 PPP2R5EQ16537 467 aa9.08□□□□□ -0.96
USP54-203ENST00000418501 ZNF410Q86VK4 478 aa9.08□□□□□ -0.96
USP54-203ENST00000418501 EMID1Q96A84 441 aaPredicted RBP9.08□□□□□ -0.96
USP54-203ENST00000418501 RPF1Q9H9Y2 349 aaKnown RBP9.08□□□□□ -0.96
USP54-203ENST00000418501 IGKV6D-21A0A0A0MT36 114 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms