RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 ERICH6BQ5W0A0 696 aa5.97□□□□□ -1.45
VPS54-204ENST00000416400 TMEM200BQ69YZ2 307 aa5.97□□□□□ -1.45
VPS54-204ENST00000416400 GPR155Q7Z3F1 870 aa5.97□□□□□ -1.45
VPS54-204ENST00000416400 BMP8AQ7Z5Y6 402 aa5.97□□□□□ -1.45
VPS54-204ENST00000416400 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.97□□□□□ -1.45
VPS54-204ENST00000416400 OR5AN1Q8NGI8 311 aa5.97□□□□□ -1.45
VPS54-204ENST00000416400 OR14C36Q8NHC7 312 aa5.97□□□□□ -1.45
VPS54-204ENST00000416400 GFM2Q969S9 779 aaKnown RBP5.97□□□□□ -1.45
VPS54-204ENST00000416400 DYDC2Q96IM9 177 aa5.97□□□□□ -1.45
VPS54-204ENST00000416400 ACE2Q9BYF1 805 aaPredicted RBP5.97□□□□□ -1.45
VPS54-204ENST00000416400 KATNBL1Q9H079 304 aa5.97□□□□□ -1.45
VPS54-204ENST00000416400 PRDM12Q9H4Q4 367 aa5.97□□□□□ -1.45
VPS54-204ENST00000416400 PRSS50Q9UI38 385 aa5.97□□□□□ -1.45
VPS54-204ENST00000416400 TUBD1Q9UJT1 453 aa5.97□□□□□ -1.45
VPS54-204ENST00000416400 TMPRSS11EQ9UL52 423 aa5.97□□□□□ -1.45
VPS54-204ENST00000416400 DENND2AQ9ULE3 1009 aa5.97□□□□□ -1.45
VPS54-204ENST00000416400 USP18Q9UMW8 372 aa5.97□□□□□ -1.45
VPS54-204ENST00000416400 DAPK3O43293 454 aa5.96□□□□□ -1.46
VPS54-204ENST00000416400 NRP2O60462 931 aa5.96□□□□□ -1.46
VPS54-204ENST00000416400 CSF2RBP32927 897 aa5.96□□□□□ -1.46
VPS54-204ENST00000416400 STAT5BP51692 787 aa5.96□□□□□ -1.46
VPS54-204ENST00000416400 HDAC1Q13547 482 aaPredicted RBP5.96□□□□□ -1.46
VPS54-204ENST00000416400 UBE4AQ14139 1066 aa5.96□□□□□ -1.46
VPS54-204ENST00000416400 GBX1Q14549 363 aa5.96□□□□□ -1.46
VPS54-204ENST00000416400 MAN2A1Q16706 1144 aa5.96□□□□□ -1.46
VPS54-204ENST00000416400 ANO4Q32M45 955 aa5.96□□□□□ -1.46
VPS54-204ENST00000416400 UBXN11Q5T124 520 aa5.96□□□□□ -1.46
VPS54-204ENST00000416400 KLHDC10Q6PID8 442 aa5.96□□□□□ -1.46
VPS54-204ENST00000416400 ARHGEF18Q6ZSZ5 1173 aa5.96□□□□□ -1.46
VPS54-204ENST00000416400 FRMD5Q7Z6J6 570 aa5.96□□□□□ -1.46
VPS54-204ENST00000416400 THEMISQ8N1K5 641 aaPredicted RBP5.96□□□□□ -1.46
VPS54-204ENST00000416400 PPM1NQ8N819 430 aa5.96□□□□□ -1.46
VPS54-204ENST00000416400 CDYL2Q8N8U2 506 aa5.96□□□□□ -1.46
VPS54-204ENST00000416400 TSPEARQ8WU66 669 aa5.96□□□□□ -1.46
VPS54-204ENST00000416400 PSMD1Q99460 953 aa5.96□□□□□ -1.46
VPS54-204ENST00000416400 PITHD1Q9GZP4 211 aaPredicted RBP5.96□□□□□ -1.46
VPS54-204ENST00000416400 POLR3BQ9NW08 1133 aaPredicted RBP5.96□□□□□ -1.46
VPS54-204ENST00000416400 MAGEL2Q9UJ55 1249 aa5.96□□□□□ -1.46
VPS54-204ENST00000416400 VWA7Q9Y334 891 aa5.96□□□□□ -1.46
VPS54-204ENST00000416400 PCDHB6Q9Y5E3 794 aa5.96□□□□□ -1.46
VPS54-204ENST00000416400 CDY2AQ9Y6F7 541 aa5.96□□□□□ -1.46
VPS54-204ENST00000416400 ZNF536O15090 1300 aa5.96□□□□□ -1.46
VPS54-204ENST00000416400 OTOL1A6NHN0 477 aaPredicted RBP5.95□□□□□ -1.46
VPS54-204ENST00000416400 AP1G1O43747 822 aa5.95□□□□□ -1.46
VPS54-204ENST00000416400 OPHN1O60890 802 aa5.95□□□□□ -1.46
VPS54-204ENST00000416400 DTNBO60941 627 aa5.95□□□□□ -1.46
VPS54-204ENST00000416400 CELA3BP08861 270 aa5.95□□□□□ -1.46
VPS54-204ENST00000416400 INHBBP09529 407 aa5.95□□□□□ -1.46
VPS54-204ENST00000416400 CNR2P34972 360 aa5.95□□□□□ -1.46
VPS54-204ENST00000416400 GPR15P49685 360 aa5.95□□□□□ -1.46
VPS54-204ENST00000416400 MRE11P49959 708 aa5.95□□□□□ -1.46
VPS54-204ENST00000416400 NRG3P56975 720 aa5.95□□□□□ -1.46
VPS54-204ENST00000416400 RHBDL3P58872 404 aa5.95□□□□□ -1.46
VPS54-204ENST00000416400 CCT2P78371 535 aaKnown RBP5.95□□□□□ -1.46
VPS54-204ENST00000416400 ZNF267Q14586 743 aaPredicted RBP5.95□□□□□ -1.46
VPS54-204ENST00000416400 PCOLCEQ15113 449 aa5.95□□□□□ -1.46
VPS54-204ENST00000416400 CATIPQ7Z7H3 387 aa5.95□□□□□ -1.46
VPS54-204ENST00000416400 LYSMD2Q8IV50 215 aa5.95□□□□□ -1.46
VPS54-204ENST00000416400 SLC41A1Q8IVJ1 513 aa5.95□□□□□ -1.46
VPS54-204ENST00000416400 GAB3Q8WWW8 586 aa5.95□□□□□ -1.46
VPS54-204ENST00000416400 GCDHQ92947 438 aaPredicted RBP5.95□□□□□ -1.46
VPS54-204ENST00000416400 RUNDC1Q96C34 613 aa5.95□□□□□ -1.46
VPS54-204ENST00000416400 TIFAQ96CG3 184 aa5.95□□□□□ -1.46
VPS54-204ENST00000416400 WDR92Q96MX6 357 aa5.95□□□□□ -1.46
VPS54-204ENST00000416400 GTPBP4Q9BZE4 634 aaKnown RBP5.95□□□□□ -1.46
VPS54-204ENST00000416400 SLC12A5Q9H2X9 1139 aa5.95□□□□□ -1.46
VPS54-204ENST00000416400 C1orf112Q9NSG2 853 aa5.95□□□□□ -1.46
VPS54-204ENST00000416400 SAP30BPQ9UHR5 308 aaKnown RBP5.95□□□□□ -1.46
VPS54-204ENST00000416400 A0A0A6YYJ9 748 aa5.94□□□□□ -1.46
VPS54-204ENST00000416400 POU2F2P09086 479 aa5.94□□□□□ -1.46
VPS54-204ENST00000416400 ZNF888P0CJ79 500 aaPredicted RBP5.94□□□□□ -1.46
VPS54-204ENST00000416400 PPP2CBP62714 309 aa5.94□□□□□ -1.46
VPS54-204ENST00000416400 PPP2CAP67775 309 aa5.94□□□□□ -1.46
VPS54-204ENST00000416400 PURAQ00577 322 aaKnown RBP5.94□□□□□ -1.46
VPS54-204ENST00000416400 GRM3Q14832 879 aa5.94□□□□□ -1.46
VPS54-204ENST00000416400 CCDC178Q5BJE1 867 aa5.94□□□□□ -1.46
VPS54-204ENST00000416400 LILRA6Q6PI73 481 aa5.94□□□□□ -1.46
VPS54-204ENST00000416400 B3GNT9Q6UX72 402 aa5.94□□□□□ -1.46
VPS54-204ENST00000416400 USP30Q70CQ3 517 aa5.94□□□□□ -1.46
VPS54-204ENST00000416400 SLC35G2Q8TBE7 412 aa5.94□□□□□ -1.46
VPS54-204ENST00000416400 LPPQ93052 612 aa5.94□□□□□ -1.46
VPS54-204ENST00000416400 HPS3Q969F9 1004 aa5.94□□□□□ -1.46
VPS54-204ENST00000416400 MBD6Q96DN6 1003 aa5.94□□□□□ -1.46
VPS54-204ENST00000416400 TAAR9Q96RI9 348 aa5.94□□□□□ -1.46
VPS54-204ENST00000416400 MAP3K14Q99558 947 aa5.94□□□□□ -1.46
VPS54-204ENST00000416400 OR10A2Q9H208 303 aa5.94□□□□□ -1.46
VPS54-204ENST00000416400 SERPINB13Q9UIV8 391 aa5.94□□□□□ -1.46
VPS54-204ENST00000416400 NR2E1Q9Y466 385 aa5.94□□□□□ -1.46
VPS54-204ENST00000416400 FRMPD2Q68DX3 1309 aaPredicted RBP5.94□□□□□ -1.46
VPS54-204ENST00000416400 ADAMTS20P59510 1910 aa5.93□□□□□ -1.46
VPS54-204ENST00000416400 TPD52L2O43399 206 aaKnown RBP5.93□□□□□ -1.46
VPS54-204ENST00000416400 CTNND1O60716 968 aaKnown RBP5.93□□□□□ -1.46
VPS54-204ENST00000416400 FSBPO95073 299 aa5.93□□□□□ -1.46
VPS54-204ENST00000416400 MALLQ13021 153 aa5.93□□□□□ -1.46
VPS54-204ENST00000416400 ATAT1Q5SQI0 421 aa5.93□□□□□ -1.46
VPS54-204ENST00000416400 SYCP2LQ5T4T6 812 aa5.93□□□□□ -1.46
VPS54-204ENST00000416400 AGBL4Q5VU57 503 aa5.93□□□□□ -1.46
VPS54-204ENST00000416400 TRIM68Q6AZZ1 485 aa5.93□□□□□ -1.46
VPS54-204ENST00000416400 LMBR1LQ6UX01 489 aa5.93□□□□□ -1.46
VPS54-204ENST00000416400 PMM1Q92871 262 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms