RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 RPS6P62753 249 aaKnown RBP14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 KDSRQ06136 332 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 ITPRIPL1Q6GPH6 555 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 SPATA5Q8NB90 893 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 MOSPD2Q8NHP6 518 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 SMAD5Q99717 465 aaKnown RBP14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 BCL2L14Q9BZR8 327 aa14.1□□□□□ -0.15
CCDC88A-204ENST00000413716 SOWAHDA6NJG2 315 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 GUCY1B2O75343 617 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 XAGE2Q96GT9 111 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 TRPC7Q9HCX4 862 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 LLGL1Q15334 1064 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 CCDC60Q8IWA6 550 aaPredicted RBP14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 ATP8B4Q8TF62 1192 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 FKBP9O95302 570 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 HMOX2P30519 316 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 LRRC36Q1X8D7 754 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 FKBP9P1Q75LS8 142 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 PRUNE1Q86TP1 453 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 P3H2Q8IVL5 708 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 TBC1D22AQ8WUA7 517 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 IPPQ9Y573 584 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 RUSC2Q8N2Y8 1516 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 MYO18AQ92614 2054 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 KPNB1Q14974 876 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 ZNF568Q3ZCX4 644 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 ARMCX6Q7L4S7 300 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 CACNA2D2Q9NY47 1150 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 APPL1Q9UKG1 709 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 ZNF532Q9HCE3 1301 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 FOXO3O43524 673 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 AKAP4Q5JQC9 854 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 HPS4Q9NQG7 708 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 ITGB1BP2Q9UKP3 347 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 XPO1O14980 1071 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 POLA2Q14181 598 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 RWDD2AQ9UIY3 292 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 THRAP3Q9Y2W1 955 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 TBKBP1A7MCY6 615 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 IL1RAPL1Q9NZN1 696 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 ANAPC7Q9UJX3 599 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 TOP2BQ02880 1626 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 MYH6P13533 1939 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 CALB1P05937 261 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 SERPINH1P50454 418 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 ZNF654Q8IZM8 581 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 SNF8Q96H20 258 aa14.09□□□□□ -0.15
CCDC88A-204ENST00000413716 FOSP01100 380 aaPredicted RBP14.08□□□□□ -0.15
CCDC88A-204ENST00000413716 ALBP02768 609 aa14.08□□□□□ -0.15
CCDC88A-204ENST00000413716 VSNL1P62760 191 aa14.08□□□□□ -0.15
CCDC88A-204ENST00000413716 KRT31Q15323 416 aa14.08□□□□□ -0.15
CCDC88A-204ENST00000413716 TERF2Q15554 542 aa14.08□□□□□ -0.15
CCDC88A-204ENST00000413716 STK25O00506 426 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 PPP3CCP48454 512 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 PLA2G4DQ86XP0 818 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 CXorf56Q9H5V9 222 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 SP110Q9HB58 689 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 ABCB6Q9NP58 842 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 CROCCQ5TZA2 2017 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 INO80B-WBP1J3KQ70 363 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 EIF2B2P49770 351 aaKnown RBP14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 RCN1Q15293 331 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 TAB1Q15750 504 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 C6orf10Q5SRN2 563 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 SNX30Q5VWJ9 437 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 ASIC4Q96FT7 647 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 INO80BQ9C086 356 aaPredicted RBP14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 CHRNA3P32297 505 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 GADL1Q6ZQY3 521 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 SSH2Q76I76 1423 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 SUPT20HQ8NEM7 779 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 YIPF2Q9BWQ6 316 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 HSPBP1Q9NZL4 362 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 ADAM21Q9UKJ8 722 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 PTGDRQ13258 359 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 ALCAMQ13740 583 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 GALNT4Q8N4A0 578 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 CDYLQ9Y232 598 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 HEY1Q9Y5J3 304 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 S100A1P23297 94 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 YWHABP31946 246 aaKnown RBP14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 ARPP19P56211 112 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 OR6B2Q6IFH4 312 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 TAS2R42Q7RTR8 314 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 PASD1Q8IV76 773 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 ATP11CQ8NB49 1132 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 MAP3K1Q13233 1512 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 AKIRIN2Q53H80 203 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 PDP2Q9P2J9 529 aa14.08□□□□□ -0.16
CCDC88A-204ENST00000413716 E7EWF7 191 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 PSMC3P17980 439 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 GPS1Q13098 491 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 SNRNP27Q8WVK2 155 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 OSBPL9Q96SU4 736 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 COPG2Q9UBF2 871 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 NXF1Q9UBU9 619 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 JAK2O60674 1132 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 ALAS1P13196 640 aa14.07□□□□□ -0.16
CCDC88A-204ENST00000413716 PPARAQ07869 468 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms