RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 WNT7AO00755 349 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 ZBTB39O15060 712 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 PPP6R2O75170 966 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 OFD1O75665 1012 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 CD2BP2O95400 341 aaKnown RBP7.06□□□□□ -1.28
USP54-202ENST00000413442 MAPTP10636 758 aaKnown RBP7.06□□□□□ -1.28
USP54-202ENST00000413442 ITGA4P13612 1032 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 GLRA2P23416 452 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 HOXA11P31270 313 aaPredicted RBP7.06□□□□□ -1.28
USP54-202ENST00000413442 FOSBP53539 338 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 DRP2Q13474 957 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 CAPSQ13938 189 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 HSP90AA2PQ14568 343 aaPredicted RBP7.06□□□□□ -1.28
USP54-202ENST00000413442 SLC39A14Q15043 492 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 SF3A1Q15459 793 aaKnown RBP7.06□□□□□ -1.28
USP54-202ENST00000413442 LEXMQ3ZCV2 418 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 NOMO2Q5JPE7 1267 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 RINT1Q6NUQ1 792 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 KCNT2Q6UVM3 1135 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 CYP26C1Q6V0L0 522 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 TMEM184AQ6ZMB5 413 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 C1orf186Q6ZWK4 172 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 CABP7Q86V35 215 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 PPFIBP1Q86W92 1011 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 POLR3FQ9H1D9 316 aaPredicted RBP7.06□□□□□ -1.28
USP54-202ENST00000413442 BHMT2Q9H2M3 363 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 CUEDC2Q9H467 287 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 CWH43Q9H720 699 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 PRKAG3Q9UGI9 489 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 ATP6V1DQ9Y5K8 247 aa7.06□□□□□ -1.28
USP54-202ENST00000413442 LAMA2P24043 3122 aaKnown RBP7.05□□□□□ -1.28
USP54-202ENST00000413442 TRANK1O15050 2925 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 VPS37CA5D8V6 355 aaPredicted RBP7.05□□□□□ -1.28
USP54-202ENST00000413442 TMEM150BA6NC51 233 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 LRRIQ4A6NIV6 560 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 TSPAN1O60635 241 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 USO1O60763 962 aaKnown RBP7.05□□□□□ -1.28
USP54-202ENST00000413442 FGF18O76093 207 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 YEATS4O95619 227 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 HOXB8P17481 243 aaPredicted RBP7.05□□□□□ -1.28
USP54-202ENST00000413442 ARF4P18085 180 aaPredicted RBP7.05□□□□□ -1.28
USP54-202ENST00000413442 AMPD3Q01432 767 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 RNASELQ05823 741 aaKnown RBP7.05□□□□□ -1.28
USP54-202ENST00000413442 MBTD1Q05BQ5 628 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 STRN3Q13033 797 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 DMP1Q13316 513 aaPredicted RBP7.05□□□□□ -1.28
USP54-202ENST00000413442 ADAM15Q13444 863 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 PRPF4BQ13523 1007 aaKnown RBP7.05□□□□□ -1.28
USP54-202ENST00000413442 BECN1Q14457 450 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 CTC1Q2NKJ3 1217 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 DCAF4L1Q3SXM0 396 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 FAM102BQ5T8I3 360 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 PDXDC1Q6P996 788 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 ELMSAN1Q6PJG2 1045 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 POTEGQ6S5H5 508 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 ZPBP2Q6X784 338 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 CCDC73Q6ZRK6 1079 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 RTL10Q7L3V2 364 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 TMCO2Q7Z6W1 182 aaPredicted RBP7.05□□□□□ -1.28
USP54-202ENST00000413442 DDX53Q86TM3 631 aaKnown RBP7.05□□□□□ -1.28
USP54-202ENST00000413442 KSR1Q8IVT5 923 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 THNSL1Q8IYQ7 743 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 KLHL23Q8NBE8 558 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 COLGALT1Q8NBJ5 622 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 POF1BQ8WVV4 589 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 TMEM169Q96HH4 297 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 SH2D3AQ9BRG2 576 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 MMTAG2Q9BU76 263 aaKnown RBP7.05□□□□□ -1.28
USP54-202ENST00000413442 COLEC11Q9BWP8 271 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 CERS4Q9HA82 394 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 RSAD1Q9HA92 442 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 TLR9Q9NR96 1032 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 TOPORSQ9NS56 1045 aaPredicted RBP7.05□□□□□ -1.28
USP54-202ENST00000413442 SEL1LQ9UBV2 794 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 TNFSF13BQ9Y275 285 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 FAN1Q9Y2M0 1017 aa7.05□□□□□ -1.28
USP54-202ENST00000413442 MRPL42Q9Y6G3 142 aaKnown RBP7.05□□□□□ -1.28
USP54-202ENST00000413442 TDRD15B5MCY1 1934 aaKnown RBP7.05□□□□□ -1.28
USP54-202ENST00000413442 RFXAPO00287 272 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 ARHGEF15O94989 841 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 BRD1O95696 1058 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 ITGB1P05556 798 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 BMP1P13497 986 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 PLS3P13797 630 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 NASPP49321 788 aaPredicted RBP7.04□□□□□ -1.28
USP54-202ENST00000413442 BCAR1P56945 870 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 CREMQ03060 361 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 ELAVL2Q12926 359 aaKnown RBP7.04□□□□□ -1.28
USP54-202ENST00000413442 ALCAMQ13740 583 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 SMC1AQ14683 1233 aaKnown RBP7.04□□□□□ -1.28
USP54-202ENST00000413442 PTPAQ15257 358 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 SKIV2LQ15477 1246 aaKnown RBP7.04□□□□□ -1.28
USP54-202ENST00000413442 CCDC85BQ15834 202 aaPredicted RBP7.04□□□□□ -1.28
USP54-202ENST00000413442 IL17AQ16552 155 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 AMHR2Q16671 573 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 UBXN11Q5T124 520 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 SLFN12LQ6IEE8 588 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 CD302Q8IX05 232 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 SLC39A11Q8N1S5 342 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 EFHBQ8N7U6 833 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms