RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 TIMP1P01033 207 aa13.53□□□□□ -0.24
LINC00339-201ENST00000404210 PRKCBP05771 671 aa13.53□□□□□ -0.24
LINC00339-201ENST00000404210 CCDC192P0DO97 292 aa13.53□□□□□ -0.24
LINC00339-201ENST00000404210 SFPQP23246 707 aaKnown RBP eCLIP13.53□□□□□ -0.24
LINC00339-201ENST00000404210 AXLP30530 894 aa13.53□□□□□ -0.24
LINC00339-201ENST00000404210 SNRPFP62306 86 aaKnown RBP13.53□□□□□ -0.24
LINC00339-201ENST00000404210 NCBP1Q09161 790 aaKnown RBP13.53□□□□□ -0.24
LINC00339-201ENST00000404210 STX1AQ16623 288 aa13.53□□□□□ -0.24
LINC00339-201ENST00000404210 KNOP1Q1ED39 458 aaKnown RBP13.53□□□□□ -0.24
LINC00339-201ENST00000404210 MAP4K3Q8IVH8 894 aa13.53□□□□□ -0.24
LINC00339-201ENST00000404210 SMYD4Q8IYR2 804 aaPredicted RBP13.53□□□□□ -0.24
LINC00339-201ENST00000404210 TMEM40Q8WWA1 233 aa13.53□□□□□ -0.24
LINC00339-201ENST00000404210 TRIM43Q96BQ3 446 aaPredicted RBP13.53□□□□□ -0.24
LINC00339-201ENST00000404210 DACH1Q9UI36 760 aa13.53□□□□□ -0.24
LINC00339-201ENST00000404210 NOC2LQ9Y3T9 749 aaKnown RBP13.53□□□□□ -0.24
LINC00339-201ENST00000404210 ALPK3Q96L96 1907 aa13.52□□□□□ -0.24
LINC00339-201ENST00000404210 CSDE1O75534 798 aaKnown RBP13.52□□□□□ -0.25
LINC00339-201ENST00000404210 PIGRP01833 764 aa13.52□□□□□ -0.25
LINC00339-201ENST00000404210 CD44P16070 742 aaKnown RBP13.52□□□□□ -0.25
LINC00339-201ENST00000404210 CYP2C18P33260 490 aa13.52□□□□□ -0.25
LINC00339-201ENST00000404210 RFC2P35250 354 aa13.52□□□□□ -0.25
LINC00339-201ENST00000404210 HOXD13P35453 343 aa13.52□□□□□ -0.25
LINC00339-201ENST00000404210 TYRO3Q06418 890 aa13.52□□□□□ -0.25
LINC00339-201ENST00000404210 KCNA1Q09470 495 aa13.52□□□□□ -0.25
LINC00339-201ENST00000404210 LPIN1Q14693 890 aa13.52□□□□□ -0.25
LINC00339-201ENST00000404210 AMHR2Q16671 573 aa13.52□□□□□ -0.25
LINC00339-201ENST00000404210 CENPPQ6IPU0 288 aa13.52□□□□□ -0.25
LINC00339-201ENST00000404210 ZPBP2Q6X784 338 aa13.52□□□□□ -0.25
LINC00339-201ENST00000404210 TSHZ1Q6ZSZ6 1077 aa13.52□□□□□ -0.25
LINC00339-201ENST00000404210 CATSPER4Q7RTX7 472 aa13.52□□□□□ -0.25
LINC00339-201ENST00000404210 SYCP3Q8IZU3 236 aa13.52□□□□□ -0.25
LINC00339-201ENST00000404210 ACO2Q99798 780 aaKnown RBP13.52□□□□□ -0.25
LINC00339-201ENST00000404210 MRPL4Q9BYD3 311 aaKnown RBP13.52□□□□□ -0.25
LINC00339-201ENST00000404210 GZF1Q9H116 711 aaPredicted RBP13.52□□□□□ -0.25
LINC00339-201ENST00000404210 CGNQ9P2M7 1197 aaKnown RBP13.52□□□□□ -0.25
LINC00339-201ENST00000404210 PRKAG2Q9UGJ0 569 aa13.52□□□□□ -0.25
LINC00339-201ENST00000404210 ST3GAL5Q9UNP4 418 aa13.52□□□□□ -0.25
LINC00339-201ENST00000404210 MAPK8IP1Q9UQF2 711 aa13.52□□□□□ -0.25
LINC00339-201ENST00000404210 SIP14410 1827 aa13.52□□□□□ -0.25
LINC00339-201ENST00000404210 UMODL1Q5DID0 1318 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 PDXKO00764 312 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 PSMA7O14818 248 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 EVI5O60447 810 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 ERLIN2O94905 339 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 RAG1P15918 1043 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 CCNE1P24864 410 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 ZNF445P59923 1031 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 PRPF4BQ13523 1007 aaKnown RBP13.51□□□□□ -0.25
LINC00339-201ENST00000404210 MBTPS1Q14703 1052 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 GPNMBQ14956 572 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 DPCR1Q3MIW9 517 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 MFSD5Q6N075 450 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 FOXR2Q6PJQ5 311 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 LRSAM1Q6UWE0 723 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 FAM228AQ86W67 206 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 NELFCDQ8IXH7 590 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 PPP1R12CQ9BZL4 782 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 GBP3Q9H0R5 595 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 KCTD10Q9H3F6 313 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 AGO3Q9H9G7 860 aaKnown RBP13.51□□□□□ -0.25
LINC00339-201ENST00000404210 ERVK-5Q9HDB9 667 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 PRDM5Q9NQX1 630 aaPredicted RBP13.51□□□□□ -0.25
LINC00339-201ENST00000404210 CHST12Q9NRB3 414 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 PADI3Q9ULW8 664 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 TRAF3IP3Q9Y228 551 aa13.51□□□□□ -0.25
LINC00339-201ENST00000404210 A0A1B0GUA9 196 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 TGFB1I1O43294 461 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 CALUO43852 315 aaPredicted RBP13.5□□□□□ -0.25
LINC00339-201ENST00000404210 TSPAN1O60635 241 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 NBNO60934 754 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 CAVIN2O95810 425 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 CXCL10P02778 98 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 EDN1P05305 212 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 GHRP10912 638 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 ARF4P18085 180 aaPredicted RBP13.5□□□□□ -0.25
LINC00339-201ENST00000404210 FGFR4P22455 802 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 ITGB8P26012 769 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 ERCC5P28715 1186 aaPredicted RBP13.5□□□□□ -0.25
LINC00339-201ENST00000404210 HOXA11P31270 313 aaPredicted RBP13.5□□□□□ -0.25
LINC00339-201ENST00000404210 CD52P31358 61 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 CCL23P55773 120 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 NFX1Q12986 1120 aaKnown RBP13.5□□□□□ -0.25
LINC00339-201ENST00000404210 PAK2Q13177 524 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 ATF7IP2Q5U623 682 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 SLFN12LQ6IEE8 588 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 TMEM199Q8N511 208 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 GOLGA5Q8TBA6 731 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 TMEM174Q8WUU8 243 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 DPF3Q92784 378 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 APBB2Q92870 758 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 P2RX5Q93086 422 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 BICD1Q96G01 975 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 TARS2Q9BW92 718 aaKnown RBP13.5□□□□□ -0.25
LINC00339-201ENST00000404210 OSBPL7Q9BZF2 842 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 WNT8AQ9H1J5 351 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 SEMA6BQ9H3T3 888 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 PTPRHQ9HD43 1115 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 TYW1Q9NV66 732 aaKnown RBP13.5□□□□□ -0.25
LINC00339-201ENST00000404210 TNFSF13BQ9Y275 285 aa13.5□□□□□ -0.25
LINC00339-201ENST00000404210 STYXL1Q9Y6J8 313 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms