RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 RNF214Q8ND24 703 aa19.82■□□□□ 0.76
SDC1-203ENST00000403076 CAGE1Q8TC20 777 aa19.82■□□□□ 0.76
SDC1-203ENST00000403076 MRPL4Q9BYD3 311 aaKnown RBP19.82■□□□□ 0.76
SDC1-203ENST00000403076 CCDC113Q9H0I3 377 aa19.82■□□□□ 0.76
SDC1-203ENST00000403076 CBX8Q9HC52 389 aa19.82■□□□□ 0.76
SDC1-203ENST00000403076 TYW1Q9NV66 732 aaKnown RBP19.82■□□□□ 0.76
SDC1-203ENST00000403076 SMTNL1A8MU46 457 aa19.81■□□□□ 0.76
SDC1-203ENST00000403076 ACKR2O00590 384 aa19.81■□□□□ 0.76
SDC1-203ENST00000403076 PDXKO00764 312 aa19.81■□□□□ 0.76
SDC1-203ENST00000403076 HNRNPDLO14979 420 aaKnown RBP19.81■□□□□ 0.76
SDC1-203ENST00000403076 CALUO43852 315 aaPredicted RBP19.81■□□□□ 0.76
SDC1-203ENST00000403076 CHRNA1P02708 482 aa19.81■□□□□ 0.76
SDC1-203ENST00000403076 CKBP12277 381 aa19.81■□□□□ 0.76
SDC1-203ENST00000403076 SFPQP23246 707 aaKnown RBP eCLIP19.81■□□□□ 0.765e-6■□□□□ 9.6
SDC1-203ENST00000403076 NCBP1Q09161 790 aaKnown RBP19.81■□□□□ 0.76
SDC1-203ENST00000403076 PRPF4BQ13523 1007 aaKnown RBP19.81■□□□□ 0.76
SDC1-203ENST00000403076 LRRC26Q2I0M4 334 aa19.81■□□□□ 0.76
SDC1-203ENST00000403076 ANKRD40Q6AI12 368 aa19.81■□□□□ 0.76
SDC1-203ENST00000403076 GAS2L3Q86XJ1 694 aa19.81■□□□□ 0.76
SDC1-203ENST00000403076 KCNN1Q92952 543 aa19.81■□□□□ 0.76
SDC1-203ENST00000403076 ABHD8Q96I13 439 aa19.81■□□□□ 0.76
SDC1-203ENST00000403076 BPIFA3Q9BQP9 254 aa19.81■□□□□ 0.76
SDC1-203ENST00000403076 IKZF4Q9H2S9 585 aa19.81■□□□□ 0.76
SDC1-203ENST00000403076 KCTD10Q9H3F6 313 aa19.81■□□□□ 0.76
SDC1-203ENST00000403076 FZD8Q9H461 694 aa19.81■□□□□ 0.76
SDC1-203ENST00000403076 USP20Q9Y2K6 914 aa19.81■□□□□ 0.76
SDC1-203ENST00000403076 CLIC2O15247 247 aa19.81■□□□□ 0.76
SDC1-203ENST00000403076 FGFR4P22455 802 aa19.81■□□□□ 0.76
SDC1-203ENST00000403076 MATR3P43243 847 aaKnown RBP eCLIP19.81■□□□□ 0.76
SDC1-203ENST00000403076 PMS1P54277 932 aaKnown RBP19.81■□□□□ 0.76
SDC1-203ENST00000403076 MYL5Q02045 173 aa19.81■□□□□ 0.76
SDC1-203ENST00000403076 LRRC63Q05C16 580 aa19.81■□□□□ 0.76
SDC1-203ENST00000403076 GOLGA5Q8TBA6 731 aa19.81■□□□□ 0.76
SDC1-203ENST00000403076 TARS2Q9BW92 718 aaKnown RBP19.81■□□□□ 0.76
SDC1-203ENST00000403076 ZMYM2Q9UBW7 1377 aa19.8■□□□□ 0.76
SDC1-203ENST00000403076 TGFB1I1O43294 461 aa19.8■□□□□ 0.76
SDC1-203ENST00000403076 RPS6KA5O75582 802 aa19.8■□□□□ 0.76
SDC1-203ENST00000403076 MGAT3Q09327 533 aa19.8■□□□□ 0.76
SDC1-203ENST00000403076 FAAP100Q0VG06 881 aa19.8■□□□□ 0.76
SDC1-203ENST00000403076 FAM187BQ17R55 369 aa19.8■□□□□ 0.76
SDC1-203ENST00000403076 FAM26DQ5JW98 314 aa19.8■□□□□ 0.76
SDC1-203ENST00000403076 PPP4R3CPQ6ZMV5 832 aa19.8■□□□□ 0.76
SDC1-203ENST00000403076 ENOX1Q8TC92 643 aaKnown RBP19.8■□□□□ 0.76
SDC1-203ENST00000403076 TMEM40Q8WWA1 233 aa19.8■□□□□ 0.76
SDC1-203ENST00000403076 PRIMPOLQ96LW4 560 aa19.8■□□□□ 0.76
SDC1-203ENST00000403076 TMEM39AQ9NV64 488 aa19.8■□□□□ 0.76
SDC1-203ENST00000403076 ANKRD63C9JTQ0 380 aa19.79■□□□□ 0.76
SDC1-203ENST00000403076 GOLGA6L19H0YKK7 550 aa19.79■□□□□ 0.76
SDC1-203ENST00000403076 IQCF3P0C7M6 154 aa19.79■□□□□ 0.76
SDC1-203ENST00000403076 SELPP16109 830 aa19.79■□□□□ 0.76
SDC1-203ENST00000403076 SNRPFP62306 86 aaKnown RBP19.79■□□□□ 0.76
SDC1-203ENST00000403076 PCBP1Q15365 356 aaKnown RBP eCLIP19.79■□□□□ 0.763e-7■■■■■ 64.9
SDC1-203ENST00000403076 SPATA1Q5VX52 437 aa19.79■□□□□ 0.76
SDC1-203ENST00000403076 TTI2Q6NXR4 508 aa19.79■□□□□ 0.76
SDC1-203ENST00000403076 LUZP1Q86V48 1076 aa19.79■□□□□ 0.76
SDC1-203ENST00000403076 CSGALNACT2Q8N6G5 542 aa19.79■□□□□ 0.76
SDC1-203ENST00000403076 TCHPQ9BT92 498 aa19.79■□□□□ 0.76
SDC1-203ENST00000403076 HIPK3Q9H422 1215 aa19.79■□□□□ 0.76
SDC1-203ENST00000403076 CGNQ9P2M7 1197 aaKnown RBP19.79■□□□□ 0.76
SDC1-203ENST00000403076 TRAF3IP3Q9Y228 551 aa19.79■□□□□ 0.76
SDC1-203ENST00000403076 NOC2LQ9Y3T9 749 aaKnown RBP19.79■□□□□ 0.76
SDC1-203ENST00000403076 CCDC85CA6NKD9 419 aa19.78■□□□□ 0.76
SDC1-203ENST00000403076 TISP43B9A030 160 aa19.78■□□□□ 0.76
SDC1-203ENST00000403076 IKBKBO14920 756 aa19.78■□□□□ 0.76
SDC1-203ENST00000403076 B4GALT5O43286 388 aa19.78■□□□□ 0.76
SDC1-203ENST00000403076 CLTBP09497 229 aa19.78■□□□□ 0.76
SDC1-203ENST00000403076 GHRP10912 638 aa19.78■□□□□ 0.76
SDC1-203ENST00000403076 RPL13P26373 211 aaKnown RBP19.78■□□□□ 0.76
SDC1-203ENST00000403076 TPM4P67936 248 aa19.78■□□□□ 0.76
SDC1-203ENST00000403076 RBL2Q08999 1139 aa19.78■□□□□ 0.76
SDC1-203ENST00000403076 IQCB1Q15051 598 aa19.78■□□□□ 0.76
SDC1-203ENST00000403076 EDRF1Q3B7T1 1238 aa19.78■□□□□ 0.76
SDC1-203ENST00000403076 ZCWPW2Q504Y3 356 aa19.78■□□□□ 0.76
SDC1-203ENST00000403076 ATF7IP2Q5U623 682 aa19.78■□□□□ 0.76
SDC1-203ENST00000403076 ARMCX5Q6P1M9 558 aa19.78■□□□□ 0.76
SDC1-203ENST00000403076 ZPBP2Q6X784 338 aa19.78■□□□□ 0.76
SDC1-203ENST00000403076 LRRC8DQ7L1W4 858 aa19.78■□□□□ 0.76
SDC1-203ENST00000403076 DHX40Q8IX18 779 aaKnown RBP19.78■□□□□ 0.76
SDC1-203ENST00000403076 MED15Q96RN5 788 aa19.78■□□□□ 0.76
SDC1-203ENST00000403076 ACO2Q99798 780 aaKnown RBP19.78■□□□□ 0.76
SDC1-203ENST00000403076 SRRTQ9BXP5 876 aaKnown RBP19.78■□□□□ 0.76
SDC1-203ENST00000403076 AGPAT3Q9NRZ7 376 aa19.78■□□□□ 0.76
SDC1-203ENST00000403076 NFE2L3Q9Y4A8 694 aa19.78■□□□□ 0.76
SDC1-203ENST00000403076 TTLL13PA6NNM8 815 aa19.77■□□□□ 0.76
SDC1-203ENST00000403076 PITPNM1O00562 1244 aa19.77■□□□□ 0.76
SDC1-203ENST00000403076 TSPAN1O60635 241 aa19.77■□□□□ 0.76
SDC1-203ENST00000403076 FGFR1OPO95684 399 aaKnown RBP19.77■□□□□ 0.76
SDC1-203ENST00000403076 PIGRP01833 764 aa19.77■□□□□ 0.76
SDC1-203ENST00000403076 NR3C1P04150 777 aa19.77■□□□□ 0.76
SDC1-203ENST00000403076 EDN1P05305 212 aa19.77■□□□□ 0.76
SDC1-203ENST00000403076 CYP2J2P51589 502 aa19.77■□□□□ 0.76
SDC1-203ENST00000403076 FKBP3Q00688 224 aaKnown RBP19.77■□□□□ 0.76
SDC1-203ENST00000403076 NFX1Q12986 1120 aaKnown RBP19.77■□□□□ 0.76
SDC1-203ENST00000403076 ADAM9Q13443 819 aa19.77■□□□□ 0.76
SDC1-203ENST00000403076 FBXO47Q5MNV8 452 aa19.77■□□□□ 0.76
SDC1-203ENST00000403076 SLFN12LQ6IEE8 588 aa19.77■□□□□ 0.76
SDC1-203ENST00000403076 UBE2Q1Q7Z7E8 422 aa19.77■□□□□ 0.76
SDC1-203ENST00000403076 NOC3LQ8WTT2 800 aaKnown RBP19.77■□□□□ 0.76
SDC1-203ENST00000403076 POMGNT1Q8WZA1 660 aa19.77■□□□□ 0.76
SDC1-203ENST00000403076 CPB2Q96IY4 423 aa19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms