RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 SYDE1Q6ZW31 735 aaPredicted RBP11.8□□□□□ -0.52
HPS4-202ENST00000398145 ZBED8Q8IZ13 594 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 ARHGAP18Q8N392 663 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 TTC13Q8NBP0 860 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 MTMR8Q96EF0 704 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 TRABDQ9H4I3 376 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 SUDS3Q9H7L9 328 aaPredicted RBP11.8□□□□□ -0.52
HPS4-202ENST00000398145 SHPRHQ149N8 1683 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 FAM47DPA6NHR8 397 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 CREB3O43889 395 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 NCF2P19878 526 aaPredicted RBP11.79□□□□□ -0.52
HPS4-202ENST00000398145 FXR2P51116 673 aaKnown RBP eCLIP11.79□□□□□ -0.52
HPS4-202ENST00000398145 CCDC125Q86Z20 511 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 CREG2Q8IUH2 290 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 DCAF4Q8WV16 495 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 PPWD1Q96BP3 646 aaKnown RBP11.79□□□□□ -0.52
HPS4-202ENST00000398145 C9orf72Q96LT7 481 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 FGD4Q96M96 766 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 EHD4Q9H223 541 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 NDE1Q9NXR1 346 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 SEPT9Q9UHD8 586 aaPredicted RBP11.79□□□□□ -0.52
HPS4-202ENST00000398145 GOLGA8MH3BSY2 632 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 TULP2O00295 520 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 SYF2O95926 243 aaKnown RBP11.79□□□□□ -0.52
HPS4-202ENST00000398145 ABCD1P33897 745 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 PDE6BP35913 854 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 FMO5P49326 533 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 PRELPP51888 382 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 COPS2P61201 443 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 AP2B1P63010 937 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 PDIA2Q13087 525 aaKnown RBP11.79□□□□□ -0.52
HPS4-202ENST00000398145 ANKRD20A4Q4UJ75 823 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 ANKRD20A8PQ5CZ79 823 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 ANKRD20A2Q5SQ80 823 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 ANKRD20A1Q5TYW2 823 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 PIP4K2CQ8TBX8 421 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 SERPINI1Q99574 410 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 NBPF3Q9H094 633 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 A6NJR5 290 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 KRT38O76015 456 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 EYA4O95677 639 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 PMS1P54277 932 aaKnown RBP11.79□□□□□ -0.52
HPS4-202ENST00000398145 SNAP25P60880 206 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 MRPS35P82673 323 aaKnown RBP11.79□□□□□ -0.52
HPS4-202ENST00000398145 SEC23AQ15436 765 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 MEA1Q16626 185 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 KYNUQ16719 465 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 KRT39Q6A163 491 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 COL23A1Q86Y22 540 aaPredicted RBP11.79□□□□□ -0.52
HPS4-202ENST00000398145 ATP11CQ8NB49 1132 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 STAMBPL1Q96FJ0 436 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 TLR10Q9BXR5 811 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 FAM217BQ9NTX9 383 aaPredicted RBP11.79□□□□□ -0.52
HPS4-202ENST00000398145 UVRAGQ9P2Y5 699 aa11.79□□□□□ -0.52
HPS4-202ENST00000398145 GOLGA8QA0A0J9YX86 632 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 A0A0U1RQJ8 604 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 GOLGA8OA6NCC3 632 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 ZSCAN5CA6NGD5 496 aaPredicted RBP11.78□□□□□ -0.52
HPS4-202ENST00000398145 GOLGA8NF8WBI6 632 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 SAT1P21673 171 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 MAPK7Q13164 816 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 ACTRT1Q8TDG2 376 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 ABTB1Q969K4 478 aaPredicted RBP11.78□□□□□ -0.52
HPS4-202ENST00000398145 EFHD1Q9BUP0 239 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 A0A087X0B3 334 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 TCP10L2B9ZVM9 353 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 GSTA1P08263 222 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 CD58P19256 250 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 NMT1P30419 496 aaKnown RBP11.78□□□□□ -0.52
HPS4-202ENST00000398145 KCNQ4P56696 695 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 ITIH4Q14624 930 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 KRT80Q6KB66 452 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 TMEM179Q6ZVK1 233 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 ERICH1Q86X53 443 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 CFAP36Q96G28 342 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 LRGUKQ96M69 825 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 RBM15Q96T37 977 aaKnown RBP eCLIP11.78□□□□□ -0.522e-6■■■■□ 23.7
HPS4-202ENST00000398145 EIF2AK1Q9BQI3 630 aaKnown RBP11.78□□□□□ -0.52
HPS4-202ENST00000398145 KDM4CQ9H3R0 1056 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 SEMA6BQ9H3T3 888 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 APOBEC2Q9Y235 224 aaKnown RBP11.78□□□□□ -0.52
HPS4-202ENST00000398145 SLIT1O75093 1534 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 H0YIN7 160 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 CLDN3O15551 220 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 ANP32DO95626 131 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 KCNJ1P48048 391 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 PKN1Q16512 942 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 TEX9Q8N6V9 391 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 DAGLBQ8NCG7 672 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 TMEM35BQ8NCS4 154 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 GPR101Q96P66 508 aaPredicted RBP11.78□□□□□ -0.52
HPS4-202ENST00000398145 REEP2Q9BRK0 252 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 CD209Q9NNX6 404 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 DDX20Q9UHI6 824 aaKnown RBP11.78□□□□□ -0.52
HPS4-202ENST00000398145 BAZ2BQ9UIF8 2168 aaKnown RBP11.78□□□□□ -0.52
HPS4-202ENST00000398145 TECPR2O15040 1411 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 FSBPO95073 299 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 ZBED1O96006 694 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 SCP2P22307 547 aa11.78□□□□□ -0.52
HPS4-202ENST00000398145 PPP2R5CQ13362 524 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms