RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 PPM1AP35813 382 aa11.54□□□□□ -0.56
NEDD8-202ENST00000396828 GUCY1B3Q02153 619 aa11.54□□□□□ -0.56
NEDD8-202ENST00000396828 SMC1AQ14683 1233 aaKnown RBP11.54□□□□□ -0.56
NEDD8-202ENST00000396828 NONOQ15233 471 aaKnown RBP eCLIP11.54□□□□□ -0.56
NEDD8-202ENST00000396828 TWF2Q6IBS0 349 aaKnown RBP11.54□□□□□ -0.56
NEDD8-202ENST00000396828 GALNT17Q6IS24 598 aa11.54□□□□□ -0.56
NEDD8-202ENST00000396828 ZNF280BQ86YH2 543 aa11.54□□□□□ -0.56
NEDD8-202ENST00000396828 VPS52Q8N1B4 723 aa11.54□□□□□ -0.56
NEDD8-202ENST00000396828 ZNF710Q8N1W2 664 aa11.54□□□□□ -0.56
NEDD8-202ENST00000396828 TMEM143Q96AN5 459 aa11.54□□□□□ -0.56
NEDD8-202ENST00000396828 GBP4Q96PP9 640 aa11.54□□□□□ -0.56
NEDD8-202ENST00000396828 PHF20Q9BVI0 1012 aa11.54□□□□□ -0.56
NEDD8-202ENST00000396828 TRAIPQ9BWF2 469 aa11.54□□□□□ -0.56
NEDD8-202ENST00000396828 ZBP1Q9H171 429 aa11.54□□□□□ -0.56
NEDD8-202ENST00000396828 POMKQ9H5K3 350 aa11.54□□□□□ -0.56
NEDD8-202ENST00000396828 CYP26B1Q9NR63 512 aa11.54□□□□□ -0.56
NEDD8-202ENST00000396828 CHST12Q9NRB3 414 aa11.54□□□□□ -0.56
NEDD8-202ENST00000396828 FAM105AQ9NUU6 356 aa11.54□□□□□ -0.56
NEDD8-202ENST00000396828 DACT1Q9NYF0 836 aa11.54□□□□□ -0.56
NEDD8-202ENST00000396828 RGL1Q9NZL6 768 aa11.54□□□□□ -0.56
NEDD8-202ENST00000396828 INPP5FQ9Y2H2 1132 aa11.54□□□□□ -0.56
NEDD8-202ENST00000396828 ZDHHC9Q9Y397 364 aa11.54□□□□□ -0.56
NEDD8-202ENST00000396828 ZFHX2Q9C0A1 2572 aaPredicted RBP11.54□□□□□ -0.56
NEDD8-202ENST00000396828 FRYLO94915 3013 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 C2CD4DB7Z1M9 353 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 DDHD2O94830 711 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 GALTP07902 379 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 SRGAP2CP0DJJ0 459 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 HOXA11P31270 313 aaPredicted RBP11.53□□□□□ -0.56
NEDD8-202ENST00000396828 CA8P35219 290 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 KRT2P35908 639 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 SLC11A1P49279 550 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 ALDH7A1P49419 539 aaKnown RBP11.53□□□□□ -0.56
NEDD8-202ENST00000396828 PSMC5P62195 406 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 SIGLEC14Q08ET2 396 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 TCF15Q12870 199 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 PPP2R5CQ13362 524 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 PTPN21Q16825 1174 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 UBXN11Q5T124 520 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 MOXD1Q6UVY6 613 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 AGMOQ6ZNB7 445 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 CATSPER4Q7RTX7 472 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 BRAPQ7Z569 592 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 FERMT3Q86UX7 667 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 PRPF31Q8WWY3 499 aaKnown RBP11.53□□□□□ -0.56
NEDD8-202ENST00000396828 IGSF21Q96ID5 467 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 GBP3Q9H0R5 595 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 KCNH6Q9H252 994 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 PCDHB2Q9Y5E7 798 aa11.53□□□□□ -0.56
NEDD8-202ENST00000396828 ARID2Q68CP9 1835 aa11.52□□□□□ -0.57
NEDD8-202ENST00000396828 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.52□□□□□ -0.57
NEDD8-202ENST00000396828 WNT7AO00755 349 aa11.52□□□□□ -0.57
NEDD8-202ENST00000396828 CCNT1O60563 726 aaKnown RBP11.52□□□□□ -0.57
NEDD8-202ENST00000396828 ZNF623O75123 536 aa11.52□□□□□ -0.57
NEDD8-202ENST00000396828 HOXB8P17481 243 aaPredicted RBP11.52□□□□□ -0.57
NEDD8-202ENST00000396828 SFPQP23246 707 aaKnown RBP eCLIP11.52□□□□□ -0.57
NEDD8-202ENST00000396828 QARSP47897 775 aaKnown RBP11.52□□□□□ -0.57
NEDD8-202ENST00000396828 DNM2P50570 870 aa11.52□□□□□ -0.57
NEDD8-202ENST00000396828 SPIRE1Q08AE8 756 aa11.52□□□□□ -0.57
NEDD8-202ENST00000396828 NOMO2Q5JPE7 1267 aa11.52□□□□□ -0.57
NEDD8-202ENST00000396828 RARS2Q5T160 578 aaKnown RBP11.52□□□□□ -0.57
NEDD8-202ENST00000396828 PIK3AP1Q6ZUJ8 805 aa11.52□□□□□ -0.57
NEDD8-202ENST00000396828 KRT25Q7Z3Z0 450 aa11.52□□□□□ -0.57
NEDD8-202ENST00000396828 ZNF410Q86VK4 478 aa11.52□□□□□ -0.57
NEDD8-202ENST00000396828 FBXL6Q8N531 539 aa11.52□□□□□ -0.57
NEDD8-202ENST00000396828 SLC22A17Q8WUG5 538 aa11.52□□□□□ -0.57
NEDD8-202ENST00000396828 CASP10Q92851 521 aa11.52□□□□□ -0.57
NEDD8-202ENST00000396828 TMEM169Q96HH4 297 aa11.52□□□□□ -0.57
NEDD8-202ENST00000396828 MRPL9Q9BYD2 267 aaKnown RBP11.52□□□□□ -0.57
NEDD8-202ENST00000396828 ADAM7Q9H2U9 754 aa11.52□□□□□ -0.57
NEDD8-202ENST00000396828 FOXP1Q9H334 677 aaPredicted RBP11.52□□□□□ -0.57
NEDD8-202ENST00000396828 DHX33Q9H6R0 707 aaKnown RBP11.52□□□□□ -0.57
NEDD8-202ENST00000396828 AGPAT5Q9NUQ2 364 aa11.52□□□□□ -0.57
NEDD8-202ENST00000396828 COL4A3BPQ9Y5P4 624 aa11.52□□□□□ -0.57
NEDD8-202ENST00000396828 A0A087WWV3 80 aa11.51□□□□□ -0.57
NEDD8-202ENST00000396828 FSD2A1L4K1 749 aa11.51□□□□□ -0.57
NEDD8-202ENST00000396828 POMCP01189 267 aa11.51□□□□□ -0.57
NEDD8-202ENST00000396828 ASGR2P07307 311 aa11.51□□□□□ -0.57
NEDD8-202ENST00000396828 SRGAP2BP0DMP2 458 aa11.51□□□□□ -0.57
NEDD8-202ENST00000396828 CTSAP10619 480 aa11.51□□□□□ -0.57
NEDD8-202ENST00000396828 CDC42EP1Q00587 391 aa11.51□□□□□ -0.57
NEDD8-202ENST00000396828 CYP4A11Q02928 519 aa11.51□□□□□ -0.57
NEDD8-202ENST00000396828 LAMTOR4Q0VGL1 99 aa11.51□□□□□ -0.57
NEDD8-202ENST00000396828 RESTQ13127 1097 aa11.51□□□□□ -0.57
NEDD8-202ENST00000396828 NR5A1Q13285 461 aa11.51□□□□□ -0.57
NEDD8-202ENST00000396828 CTTNQ14247 550 aaKnown RBP11.51□□□□□ -0.57
NEDD8-202ENST00000396828 PPP4R3AQ6IN85 833 aa11.51□□□□□ -0.57
NEDD8-202ENST00000396828 GLB1LQ6UWU2 654 aa11.51□□□□□ -0.57
NEDD8-202ENST00000396828 TAS1R1Q7RTX1 841 aa11.51□□□□□ -0.57
NEDD8-202ENST00000396828 MRPL10Q7Z7H8 261 aaKnown RBP11.51□□□□□ -0.57
NEDD8-202ENST00000396828 NEK8Q86SG6 692 aa11.51□□□□□ -0.57
NEDD8-202ENST00000396828 DDX53Q86TM3 631 aaKnown RBP11.51□□□□□ -0.57
NEDD8-202ENST00000396828 DIS3L2Q8IYB7 885 aaKnown RBP11.51□□□□□ -0.57
NEDD8-202ENST00000396828 KREMEN2Q8NCW0 462 aa11.51□□□□□ -0.57
NEDD8-202ENST00000396828 DYDC2Q96IM9 177 aa11.51□□□□□ -0.57
NEDD8-202ENST00000396828 CEP170P1Q96L14 293 aa11.51□□□□□ -0.57
NEDD8-202ENST00000396828 LXNQ9BS40 222 aa11.51□□□□□ -0.57
NEDD8-202ENST00000396828 FAM86C1Q9NVL1 165 aa11.51□□□□□ -0.57
NEDD8-202ENST00000396828 CACNA1HO95180 2353 aa11.5□□□□□ -0.57
NEDD8-202ENST00000396828 CCDC194A0A1B0GVG4 234 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms