RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 PHLPP2Q6ZVD8 1323 aa23.96■■□□□ 1.43
CLN3-207ENST00000395653 CNTNAP2Q9UHC6 1331 aa23.96■■□□□ 1.43
CLN3-207ENST00000395653 A0A087X0B3 334 aa23.95■■□□□ 1.42
CLN3-207ENST00000395653 NPHP3-ACAD11A0A0J9YXS1 232 aa23.95■■□□□ 1.42
CLN3-207ENST00000395653 A0A1B0GUA9 196 aa23.95■■□□□ 1.42
CLN3-207ENST00000395653 CCDC169A6NNP5 214 aa23.95■■□□□ 1.42
CLN3-207ENST00000395653 SFI1A8K8P3 1242 aa23.95■■□□□ 1.42
CLN3-207ENST00000395653 ACKR2O00590 384 aa23.95■■□□□ 1.42
CLN3-207ENST00000395653 B4GALT5O43286 388 aa23.95■■□□□ 1.42
CLN3-207ENST00000395653 PRKCBP05771 671 aa23.95■■□□□ 1.42
CLN3-207ENST00000395653 FGFR1P11362 822 aa23.95■■□□□ 1.42
CLN3-207ENST00000395653 ANP32AP39687 249 aaKnown RBP23.95■■□□□ 1.42
CLN3-207ENST00000395653 RNF169Q8NCN4 708 aa23.95■■□□□ 1.42
CLN3-207ENST00000395653 MYLIPQ8WY64 445 aa23.95■■□□□ 1.42
CLN3-207ENST00000395653 RSPH1Q8WYR4 309 aa23.95■■□□□ 1.42
CLN3-207ENST00000395653 CLP1Q92989 425 aaKnown RBP23.95■■□□□ 1.42
CLN3-207ENST00000395653 SPATA32Q96LK8 384 aa23.95■■□□□ 1.42
CLN3-207ENST00000395653 C17orf80Q9BSJ5 609 aa23.95■■□□□ 1.42
CLN3-207ENST00000395653 KMT5AQ9NQR1 393 aa23.95■■□□□ 1.42
CLN3-207ENST00000395653 RNF19AQ9NV58 838 aa23.95■■□□□ 1.42
CLN3-207ENST00000395653 LARSQ9P2J5 1176 aaKnown RBP23.95■■□□□ 1.42
CLN3-207ENST00000395653 ARHGAP28Q9P2N2 729 aa23.95■■□□□ 1.42
CLN3-207ENST00000395653 RWDD3Q9Y3V2 267 aa23.95■■□□□ 1.42
CLN3-207ENST00000395653 SLC34A2O95436 690 aa23.94■■□□□ 1.42
CLN3-207ENST00000395653 KRT18P05783 430 aaKnown RBP23.94■■□□□ 1.42
CLN3-207ENST00000395653 LINC00271P0C7V0 271 aa23.94■■□□□ 1.42
CLN3-207ENST00000395653 ZNF131P52739 623 aa23.94■■□□□ 1.42
CLN3-207ENST00000395653 CACNB1Q02641 598 aaPredicted RBP23.94■■□□□ 1.42
CLN3-207ENST00000395653 GIT2Q14161 759 aa23.94■■□□□ 1.42
CLN3-207ENST00000395653 PAN2Q504Q3 1202 aaKnown RBP23.94■■□□□ 1.42
CLN3-207ENST00000395653 SV2BQ7L1I2 683 aa23.94■■□□□ 1.42
CLN3-207ENST00000395653 PDILTQ8N807 584 aa23.94■■□□□ 1.42
CLN3-207ENST00000395653 CNNM3Q8NE01 707 aa23.94■■□□□ 1.42
CLN3-207ENST00000395653 PGBD4Q96DM1 585 aa23.94■■□□□ 1.42
CLN3-207ENST00000395653 CHAMP1Q96JM3 812 aa23.94■■□□□ 1.42
CLN3-207ENST00000395653 GAS2L1Q99501 681 aaPredicted RBP23.94■■□□□ 1.42
CLN3-207ENST00000395653 PANK2Q9BZ23 570 aa23.94■■□□□ 1.42
CLN3-207ENST00000395653 SCAND2PQ9GZW5 306 aaPredicted RBP23.94■■□□□ 1.42
CLN3-207ENST00000395653 TMEM134Q9H6X4 195 aa23.94■■□□□ 1.42
CLN3-207ENST00000395653 MTUS1Q9ULD2 1270 aa23.94■■□□□ 1.42
CLN3-207ENST00000395653 STXBP5LQ9Y2K9 1186 aa23.94■■□□□ 1.42
CLN3-207ENST00000395653 FNDC1Q4ZHG4 1894 aaPredicted RBP23.94■■□□□ 1.42
CLN3-207ENST00000395653 TBKBP1A7MCY6 615 aa23.93■■□□□ 1.42
CLN3-207ENST00000395653 K7ERI5 159 aa23.93■■□□□ 1.42
CLN3-207ENST00000395653 SMTNP53814 917 aa23.93■■□□□ 1.42
CLN3-207ENST00000395653 PRPF4BQ13523 1007 aaKnown RBP23.93■■□□□ 1.42
CLN3-207ENST00000395653 CLLU1OSQ5K130 101 aa23.93■■□□□ 1.42
CLN3-207ENST00000395653 RESP18Q5W5W9 173 aa23.93■■□□□ 1.42
CLN3-207ENST00000395653 MRPL10Q7Z7H8 261 aaKnown RBP23.93■■□□□ 1.42
CLN3-207ENST00000395653 ABI1Q8IZP0 508 aa23.93■■□□□ 1.42
CLN3-207ENST00000395653 MRPL42Q9Y6G3 142 aaKnown RBP23.93■■□□□ 1.42
CLN3-207ENST00000395653 RALGAPA2Q2PPJ7 1873 aa23.93■■□□□ 1.42
CLN3-207ENST00000395653 EPOPA6NHQ4 379 aa23.93■■□□□ 1.42
CLN3-207ENST00000395653 FAM13AO94988 1023 aa23.93■■□□□ 1.42
CLN3-207ENST00000395653 E2F4Q16254 413 aa23.93■■□□□ 1.42
CLN3-207ENST00000395653 EPC2Q52LR7 807 aa23.93■■□□□ 1.42
CLN3-207ENST00000395653 SLC27A1Q6PCB7 646 aa23.93■■□□□ 1.42
CLN3-207ENST00000395653 TMEM192Q8IY95 271 aa23.93■■□□□ 1.42
CLN3-207ENST00000395653 CASD1Q96PB1 797 aa23.93■■□□□ 1.42
CLN3-207ENST00000395653 CUEDC2Q9H467 287 aa23.93■■□□□ 1.42
CLN3-207ENST00000395653 PARVGQ9HBI0 331 aa23.93■■□□□ 1.42
CLN3-207ENST00000395653 FAM13BQ9NYF5 915 aa23.93■■□□□ 1.42
CLN3-207ENST00000395653 EDN1P05305 212 aa23.92■■□□□ 1.42
CLN3-207ENST00000395653 FOSL2P15408 326 aa23.92■■□□□ 1.42
CLN3-207ENST00000395653 LIG1P18858 919 aa23.92■■□□□ 1.42
CLN3-207ENST00000395653 FBXO22Q8NEZ5 403 aa23.92■■□□□ 1.42
CLN3-207ENST00000395653 KCNN1Q92952 543 aa23.92■■□□□ 1.42
CLN3-207ENST00000395653 LPPQ93052 612 aa23.92■■□□□ 1.42
CLN3-207ENST00000395653 EIF2AQ9BY44 585 aaKnown RBP23.92■■□□□ 1.42
CLN3-207ENST00000395653 TRANK1O15050 2925 aa23.92■■□□□ 1.42
CLN3-207ENST00000395653 NLRC5Q86WI3 1866 aa23.91■■□□□ 1.42
CLN3-207ENST00000395653 TTLL13PA6NNM8 815 aa23.91■■□□□ 1.42
CLN3-207ENST00000395653 C5orf67F2Z3F1 127 aa23.91■■□□□ 1.42
CLN3-207ENST00000395653 H0YCG3 227 aa23.91■■□□□ 1.42
CLN3-207ENST00000395653 N4BP3O15049 544 aa23.91■■□□□ 1.42
CLN3-207ENST00000395653 SLC16A4O15374 487 aa23.91■■□□□ 1.42
CLN3-207ENST00000395653 TBCAO75347 108 aaKnown RBP23.91■■□□□ 1.42
CLN3-207ENST00000395653 BMPR1AP36894 532 aa23.91■■□□□ 1.42
CLN3-207ENST00000395653 NCKAP1LP55160 1127 aa23.91■■□□□ 1.42
CLN3-207ENST00000395653 ADGRE1Q14246 886 aa23.91■■□□□ 1.42
CLN3-207ENST00000395653 ADALQ6DHV7 355 aa23.91■■□□□ 1.42
CLN3-207ENST00000395653 LRRC43Q8N309 656 aa23.91■■□□□ 1.42
CLN3-207ENST00000395653 IQUBQ8NA54 791 aa23.91■■□□□ 1.42
CLN3-207ENST00000395653 SMG8Q8ND04 991 aaKnown RBP23.91■■□□□ 1.42
CLN3-207ENST00000395653 TMEM161BQ8NDZ6 487 aa23.91■■□□□ 1.42
CLN3-207ENST00000395653 HELQQ8TDG4 1101 aa23.91■■□□□ 1.42
CLN3-207ENST00000395653 MRPL9Q9BYD2 267 aaKnown RBP23.91■■□□□ 1.42
CLN3-207ENST00000395653 TRIM6Q9C030 488 aaPredicted RBP23.91■■□□□ 1.42
CLN3-207ENST00000395653 PDZD7Q9H5P4 517 aa23.91■■□□□ 1.42
CLN3-207ENST00000395653 CIZ1Q9ULV3 898 aaPredicted RBP23.91■■□□□ 1.42
CLN3-207ENST00000395653 IPPQ9Y573 584 aa23.91■■□□□ 1.42
CLN3-207ENST00000395653 MYH11P35749 1972 aa23.9■■□□□ 1.42
CLN3-207ENST00000395653 COL4A4P53420 1690 aaPredicted RBP23.9■■□□□ 1.42
CLN3-207ENST00000395653 RFXAPO00287 272 aa23.9■■□□□ 1.42
CLN3-207ENST00000395653 RB1P06400 928 aa23.9■■□□□ 1.42
CLN3-207ENST00000395653 SCP2P22307 547 aa23.9■■□□□ 1.42
CLN3-207ENST00000395653 CTNNB1P35222 781 aa23.9■■□□□ 1.42
CLN3-207ENST00000395653 TMEM132AQ24JP5 1023 aa23.9■■□□□ 1.42
CLN3-207ENST00000395653 GLB1LQ6UWU2 654 aa23.9■■□□□ 1.42
CLN3-207ENST00000395653 AGMOQ6ZNB7 445 aa23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms