RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 BEGAINQ9BUH8 593 aa13.58□□□□□ -0.24
CIITA-202ENST00000381835 VPS16Q9H269 839 aa13.58□□□□□ -0.24
CIITA-202ENST00000381835 TRAF3IP3Q9Y228 551 aa13.58□□□□□ -0.24
CIITA-202ENST00000381835 Q9Y3F1 56 aa13.58□□□□□ -0.24
CIITA-202ENST00000381835 PPME1Q9Y570 386 aa13.58□□□□□ -0.24
CIITA-202ENST00000381835 UBE4BO95155 1302 aa13.58□□□□□ -0.24
CIITA-202ENST00000381835 DENND3A2RUS2 1198 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 LRRIQ4A6NIV6 560 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 TGFB1I1O43294 461 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 CALUO43852 315 aaPredicted RBP13.57□□□□□ -0.24
CIITA-202ENST00000381835 DUSP11O75319 330 aaKnown RBP13.57□□□□□ -0.24
CIITA-202ENST00000381835 MYL3P08590 195 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 GLRA2P23416 452 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 NR2F2P24468 414 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 EEF1GP26641 437 aaKnown RBP13.57□□□□□ -0.24
CIITA-202ENST00000381835 CCND3P30281 292 aaPredicted RBP13.57□□□□□ -0.24
CIITA-202ENST00000381835 ARL2P36404 184 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 GTF2BQ00403 316 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 ALCAMQ13740 583 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 FSCN1Q16658 493 aaKnown RBP13.57□□□□□ -0.24
CIITA-202ENST00000381835 EDRF1Q3B7T1 1238 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 FILIP1LQ4L180 1135 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 ZNF484Q5JVG2 852 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 SLC17A8Q8NDX2 589 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 SPIRE2Q8WWL2 714 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 NTPCRQ9BSD7 190 aaKnown RBP13.57□□□□□ -0.24
CIITA-202ENST00000381835 GBP3Q9H0R5 595 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 LIMA1Q9UHB6 759 aaKnown RBP13.57□□□□□ -0.24
CIITA-202ENST00000381835 ADGRA3Q8IWK6 1321 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 PES1O00541 588 aaKnown RBP13.57□□□□□ -0.24
CIITA-202ENST00000381835 SEPT4O43236 478 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 MTIF2P46199 727 aaKnown RBP13.57□□□□□ -0.24
CIITA-202ENST00000381835 ZNF569Q5MCW4 686 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 EFCAB12Q6NXP0 572 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 FOXR2Q6PJQ5 311 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 HS2ST1Q7LGA3 356 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 EXOC8Q8IYI6 725 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 PRPF31Q8WWY3 499 aaKnown RBP13.57□□□□□ -0.24
CIITA-202ENST00000381835 ACCSQ96QU6 501 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 ST6GALNAC4Q9H4F1 302 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 TMEM51Q9NW97 253 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 CDC23Q9UJX2 597 aa13.57□□□□□ -0.24
CIITA-202ENST00000381835 MYADML2A6NDP7 307 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 TULP2O00295 520 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 N4BP3O15049 544 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 CETN3O15182 167 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 PGK1P00558 417 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 GNRH1P01148 92 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 HMGCRP04035 888 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 HSPA6P17066 643 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 KLRC1P26715 233 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 CLCN3P51790 818 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 COPB1P53618 953 aaKnown RBP13.56□□□□□ -0.24
CIITA-202ENST00000381835 MAP2K1Q02750 393 aaPredicted RBP13.56□□□□□ -0.24
CIITA-202ENST00000381835 PPFIA1Q13136 1202 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 MKRN4PQ13434 485 aaPredicted RBP13.56□□□□□ -0.24
CIITA-202ENST00000381835 KIAA0753Q2KHM9 967 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 IER5Q5VY09 327 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 TCP11Q8WWU5 503 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 JPH2Q9BR39 696 aaPredicted RBP13.56□□□□□ -0.24
CIITA-202ENST00000381835 TUBGCP2Q9BSJ2 902 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 TMEM206Q9H813 350 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 TBX20Q9UMR3 447 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 IGKV6-21A0A0C4DH24 114 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 A0A0U1RQJ8 604 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 LRRC10BA6NIK2 292 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 GAS2O43903 313 aaKnown RBP13.56□□□□□ -0.24
CIITA-202ENST00000381835 MFAP3LO75121 409 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 C22orf31O95567 290 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 F2P00734 622 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 NR3C1P04150 777 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 MYCNP04198 464 aaPredicted RBP13.56□□□□□ -0.24
CIITA-202ENST00000381835 RARBP10826 455 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 CASP14P31944 242 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 GYS2P54840 703 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 ARHGEF6Q15052 776 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 PPP2R5AQ15172 486 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 CCDC40Q4G0X9 1142 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 GNASQ5JWF2 1037 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 DEPTORQ8TB45 409 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 ATRIPQ8WXE1 791 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 PSPC1Q8WXF1 523 aaKnown RBP13.56□□□□□ -0.24
CIITA-202ENST00000381835 KAT2BQ92831 832 aa13.56□□□□□ -0.24
CIITA-202ENST00000381835 TRIP12Q14669 1992 aaPredicted RBP13.56□□□□□ -0.24
CIITA-202ENST00000381835 CTAGE9A4FU28 777 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 TISP43B9A030 160 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 GJB1P08034 283 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 SRGAP2CP0DJJ0 459 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 PBX1P40424 430 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 NAMPTP43490 491 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 DNM2P50570 870 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 CAPSQ13938 189 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 GRIK4Q16099 956 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 RHPN2Q8IUC4 686 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 CNGA4Q8IV77 575 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 RETREG2Q8NC44 543 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 ZNF668Q96K58 619 aaPredicted RBP13.55□□□□□ -0.24
CIITA-202ENST00000381835 CEP63Q96MT8 703 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 ANKZF1Q9H8Y5 726 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 SPC25Q9HBM1 224 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms