RNA–Protein interactions for RNA: ENST00000377499.9

LMO7-204, Transcript of LIM domain 7, human

TSL 2

Gene LMO7, Length 3,472 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMO7-204	ENST00000377499	PARD3B	Q8TEW8	1205 aa		12.69	□□□□□ -0.38
LMO7-204	ENST00000377499	KAT2B	Q92831	832 aa		12.69	□□□□□ -0.38
LMO7-204	ENST00000377499	SPATS2L	Q9NUQ6	558 aa	Known RBP	12.69	□□□□□ -0.38
LMO7-204	ENST00000377499	TRAF3IP3	Q9Y228	551 aa		12.69	□□□□□ -0.38
LMO7-204	ENST00000377499	OTOF	Q9HC10	1997 aa		12.69	□□□□□ -0.38
LMO7-204	ENST00000377499	SYNGAP1	Q96PV0	1343 aa		12.69	□□□□□ -0.38
LMO7-204	ENST00000377499	TGFB1I1	O43294	461 aa		12.69	□□□□□ -0.38
LMO7-204	ENST00000377499	CCDC175	P0C221	793 aa		12.69	□□□□□ -0.38
LMO7-204	ENST00000377499	TRIM49	P0CI25	452 aa		12.69	□□□□□ -0.38
LMO7-204	ENST00000377499	TRIM49C	P0CI26	452 aa		12.69	□□□□□ -0.38
LMO7-204	ENST00000377499	HOXD13	P35453	343 aa		12.69	□□□□□ -0.38
LMO7-204	ENST00000377499	PRAMEF19	Q5SWL8	479 aa		12.69	□□□□□ -0.38
LMO7-204	ENST00000377499	CELF3	Q5SZQ8	465 aa	Known RBP	12.69	□□□□□ -0.38
LMO7-204	ENST00000377499	LRRC71	Q8N4P6	559 aa		12.69	□□□□□ -0.38
LMO7-204	ENST00000377499	ACRBP	Q8NEB7	543 aa		12.69	□□□□□ -0.38
LMO7-204	ENST00000377499	SAAL1	Q96ER3	474 aa		12.69	□□□□□ -0.38
LMO7-204	ENST00000377499	PANX2	Q96RD6	677 aa		12.69	□□□□□ -0.38
LMO7-204	ENST00000377499	GINS2	Q9Y248	185 aa		12.69	□□□□□ -0.38
LMO7-204	ENST00000377499	ITIH6	Q6UXX5	1313 aa		12.69	□□□□□ -0.38
LMO7-204	ENST00000377499	IGF2BP3	O00425	579 aa	Known RBP eCLIP	12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	MAPK4	P31152	587 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	LIG4	P49917	911 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	IRX1	P78414	480 aa	Predicted RBP	12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	E4F1	Q66K89	784 aa	Predicted RBP	12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	EPM2AIP1	Q7L775	607 aa	Predicted RBP	12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	KIAA1328	Q86T90	577 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	TMTC1	Q8IUR5	882 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	TRAPPC12	Q8WVT3	735 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	CD248	Q9HCU0	757 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	FAM184B	Q9ULE4	1060 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	PPP2R2C	Q9Y2T4	447 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	TNPO2	O14787	897 aa	Known RBP	12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	EDNRB	P24530	442 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	PBX1	P40424	430 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	ZNF131	P52739	623 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	APBA1	Q02410	837 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	FAM110C	Q1W6H9	321 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	SAPCD2	Q86UD0	394 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	RASAL3	Q86YV0	1011 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	RPUSD2	Q8IZ73	545 aa	Known RBP	12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	CCDC51	Q96ER9	411 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	PPP1R13B	Q96KQ4	1090 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	CHP1	Q99653	195 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	CBWD1	Q9BRT8	395 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	TIPIN	Q9BVW5	301 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	KDM4C	Q9H3R0	1056 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	RMI1	Q9H9A7	625 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	ANKFY1	Q9P2R3	1169 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499		K7ERI5	159 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	AKR1B10	O60218	316 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	SASH3	O75995	380 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	EXOC3L4	Q17RC7	722 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	LRRC31	Q6UY01	552 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	AFG1L	Q8WV93	481 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	CCDC42	Q96M95	316 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	NLRP4	Q96MN2	994 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	MAF1	Q9H063	256 aa		12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	SUDS3	Q9H7L9	328 aa	Predicted RBP	12.68	□□□□□ -0.38
LMO7-204	ENST00000377499	FAM170A	A1A519	330 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	USP4	Q13107	963 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	ALCAM	Q13740	583 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	FRMD5	Q7Z6J6	570 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	ZFYVE28	Q9HCC9	887 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	DNAI1	Q9UI46	699 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	RLF	Q13129	1914 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	DNAJC25-GNG10	A0A024R161	153 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	SOCS7	O14512	581 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	GH1	P01241	217 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	DLAT	P10515	647 aa	Known RBP	12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	H2AFX	P16104	143 aa	Predicted RBP	12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	GNG11	P61952	73 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	CETN1	Q12798	172 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	TRIM59	Q8IWR1	403 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	EFCAB13	Q8IY85	973 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	BSND	Q8WZ55	320 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	NAA15	Q9BXJ9	866 aa	Known RBP	12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	CAPN11	Q9UMQ6	739 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	TBX20	Q9UMR3	447 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	DYNC1LI2	O43237	492 aa	Predicted RBP	12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	ACTN1	P12814	892 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	ZBED6	P86452	979 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	SPA17	Q15506	151 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	C11orf91	Q3C1V1	193 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	C1QTNF12	Q5T7M4	302 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	RHPN2	Q8IUC4	686 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	XXYLT1	Q8NBI6	393 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	PPP1R13L	Q8WUF5	828 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	FAM167A	Q96KS9	214 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	GPR20	Q99678	358 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	SMARCAD1	Q9H4L7	1026 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	SLC45A1	Q9Y2W3	748 aa		12.67	□□□□□ -0.38
LMO7-204	ENST00000377499	CAPN15	O75808	1086 aa		12.66	□□□□□ -0.38
LMO7-204	ENST00000377499	PYGL	P06737	847 aa		12.66	□□□□□ -0.38
LMO7-204	ENST00000377499	ZNF286B	P0CG31	522 aa		12.66	□□□□□ -0.38
LMO7-204	ENST00000377499	CNGA1	P29973	690 aa		12.66	□□□□□ -0.38
LMO7-204	ENST00000377499	RAD9B	Q6WBX8	426 aa		12.66	□□□□□ -0.38
LMO7-204	ENST00000377499	RETREG2	Q8NC44	543 aa		12.66	□□□□□ -0.38
LMO7-204	ENST00000377499	OR6J1	Q8NGC5	347 aa		12.66	□□□□□ -0.38
LMO7-204	ENST00000377499	CCDC102A	Q96A19	550 aa		12.66	□□□□□ -0.38

Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms