RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 ATP6V1G3Q96LB4 118 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 TAF1DQ9H5J8 278 aaPredicted RBP12.31□□□□□ -0.44
VPS13A-205ENST00000376636 DDX56Q9NY93 547 aaKnown RBP12.31□□□□□ -0.44
VPS13A-205ENST00000376636 ITGB1BP2Q9UKP3 347 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 SMG5Q9UPR3 1016 aaKnown RBP12.31□□□□□ -0.44
VPS13A-205ENST00000376636 DPP9Q86TI2 863 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 PPP1R2P1Q96PQ5 205 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 PPCSQ9HAB8 311 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 WLSQ5T9L3 541 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 KCNK16Q96T55 309 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 HPS5Q9UPZ3 1129 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 RWDD3Q9Y3V2 267 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 TTLL1O95922 423 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 CCND1P24385 295 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 SLC39A14Q15043 492 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 DPY19L2Q6NUT2 758 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 RPAP3Q9H6T3 665 aaPredicted RBP12.31□□□□□ -0.44
VPS13A-205ENST00000376636 STRNO43815 780 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 RAD21L1Q9H4I0 556 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 C6orf203Q9P0P8 240 aaPredicted RBP12.31□□□□□ -0.44
VPS13A-205ENST00000376636 TRIM49P0CI25 452 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 TRIM49CP0CI26 452 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 GCKRQ14397 625 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 IL1RAPL1Q9NZN1 696 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 CD109Q6YHK3 1445 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 BNIP3LO60238 219 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 C11orf88Q6PI97 169 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 UTP6Q9NYH9 597 aaKnown RBP12.31□□□□□ -0.44
VPS13A-205ENST00000376636 ERAP1Q9NZ08 941 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 ZC3H7BQ9UGR2 993 aaKnown RBP12.31□□□□□ -0.44
VPS13A-205ENST00000376636 MLH1P40692 756 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 ROR1Q01973 937 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 MAPRE1Q15691 268 aaKnown RBP12.3□□□□□ -0.44
VPS13A-205ENST00000376636 ZNF790Q6PG37 636 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 PROM2Q8N271 834 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 TTC39CQ8N584 583 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 TSPAN17Q96FV3 270 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 CCT7Q99832 543 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 PIGUQ9H490 435 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 C14orf93Q9H972 538 aaKnown RBP12.3□□□□□ -0.44
VPS13A-205ENST00000376636 IMPAD1Q9NX62 359 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 URB2Q14146 1524 aaKnown RBP12.3□□□□□ -0.44
VPS13A-205ENST00000376636 TNKSO95271 1327 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 MYBL1P10243 752 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 THOC1Q96FV9 657 aaKnown RBP12.3□□□□□ -0.44
VPS13A-205ENST00000376636 C8orf37Q96NL8 207 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 HEY1Q9Y5J3 304 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 ANKRD49Q8WVL7 239 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 FAM162AQ96A26 154 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 ASIC4Q96FT7 647 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 MOSPD1Q9UJG1 213 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 RNMTO43148 476 aaKnown RBP12.3□□□□□ -0.44
VPS13A-205ENST00000376636 SEC24BO95487 1268 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 TBXAS1P24557 533 aaPredicted RBP12.3□□□□□ -0.44
VPS13A-205ENST00000376636 DSG1Q02413 1049 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 SPDYAQ5MJ70 313 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 P3H2Q8IVL5 708 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 AGGF1Q8N302 714 aaeCLIP12.3□□□□□ -0.44
VPS13A-205ENST00000376636 QKIQ96PU8 341 aaKnown RBP eCLIP12.3□□□□□ -0.445e-9■■■□□ 17.4
VPS13A-205ENST00000376636 RASGRF1Q13972 1273 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 KRT31Q15323 416 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 C19orf18Q8NEA5 215 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 GPT2Q8TD30 523 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 KRT84Q9NSB2 600 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 BLMP54132 1417 aaPredicted RBP12.3□□□□□ -0.44
VPS13A-205ENST00000376636 TRAPPC8Q9Y2L5 1435 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 CD58P19256 250 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 USP14P54578 494 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 GPS1Q13098 491 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 INPP5DQ92835 1189 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 PDCD10Q9BUL8 212 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 SLC13A1Q9BZW2 595 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.3□□□□□ -0.44
VPS13A-205ENST00000376636 CEP170P1Q96L14 293 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 SP110Q9HB58 689 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 ZFATQ9P243 1243 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 UGGT2Q9NYU1 1516 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 ZBTB7BO15156 539 aaPredicted RBP12.3□□□□□ -0.44
VPS13A-205ENST00000376636 TAP1Q03518 808 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 MICU2Q8IYU8 434 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 OMA1Q96E52 524 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 KRT6BP04259 564 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 TYK2P29597 1187 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 HMOX2P30519 316 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 KRT6CP48668 564 aa12.3□□□□□ -0.44
VPS13A-205ENST00000376636 SHROOM1Q2M3G4 852 aaPredicted RBP12.3□□□□□ -0.44
VPS13A-205ENST00000376636 LRRC47Q8N1G4 583 aaKnown RBP12.3□□□□□ -0.44
VPS13A-205ENST00000376636 ADGRF5Q8IZF2 1346 aa12.29□□□□□ -0.44
VPS13A-205ENST00000376636 TAF5LO75529 589 aa12.29□□□□□ -0.44
VPS13A-205ENST00000376636 KLHL12Q53G59 568 aa12.29□□□□□ -0.44
VPS13A-205ENST00000376636 SPTLC3Q9NUV7 552 aa12.29□□□□□ -0.44
VPS13A-205ENST00000376636 TNPO2O14787 897 aaKnown RBP12.29□□□□□ -0.44
VPS13A-205ENST00000376636 MTHFSDQ2M296 383 aaKnown RBP12.29□□□□□ -0.44
VPS13A-205ENST00000376636 NUP93Q8N1F7 819 aa12.29□□□□□ -0.44
VPS13A-205ENST00000376636 VPS37AQ8NEZ2 397 aa12.29□□□□□ -0.44
VPS13A-205ENST00000376636 USP44Q9H0E7 712 aa12.29□□□□□ -0.44
VPS13A-205ENST00000376636 CARD9Q9H257 536 aa12.29□□□□□ -0.44
VPS13A-205ENST00000376636 PDP2Q9P2J9 529 aa12.29□□□□□ -0.44
VPS13A-205ENST00000376636 PSAPP07602 524 aa12.29□□□□□ -0.44
VPS13A-205ENST00000376636 DHX34Q14147 1143 aaKnown RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms