RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 BTBD8Q5XKL5 378 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 ALS2CLQ60I27 953 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 DDX28Q9NUL7 540 aaKnown RBP10.81□□□□□ -0.68
CLIP1-202ENST00000358808 H2AFY2Q9P0M6 372 aaPredicted RBP10.81□□□□□ -0.68
CLIP1-202ENST00000358808 TJP2Q9UDY2 1190 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 NOVA2Q9UNW9 492 aaKnown RBP10.81□□□□□ -0.68
CLIP1-202ENST00000358808 OVOS2A0A0G2JMS6 1433 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 OVOS2A0A0J9YW53 1432 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 OVOS2Q6IE36 1432 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 NCOA3Q9Y6Q9 1424 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 DLC1Q96QB1 1528 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 RSPH10B2B2RC85 870 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 RSPH10BP0C881 870 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 RBL2Q08999 1139 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 LRRC8AQ8IWT6 810 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 GIMAP8Q8ND71 665 aaPredicted RBP10.81□□□□□ -0.68
CLIP1-202ENST00000358808 OR6P1Q8NGX9 317 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 FAM167AQ96KS9 214 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 YY1AP1Q9H869 796 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 OLFML3Q9NRN5 406 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 PLA2G4BP0C869 781 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 PCYT1AP49585 367 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 NEK9Q8TD19 979 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 SIK2Q9H0K1 926 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 SMARCAD1Q9H4L7 1026 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 CAPN10Q9HC96 672 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 RNF181Q9P0P0 153 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 NRBP1Q9UHY1 535 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 CLDN3O15551 220 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 KRT38O76015 456 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 FGAP02671 866 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 AKT1P31749 480 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 NDUFA8P51970 172 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 C16orf62Q7Z3J2 963 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 USP44Q9H0E7 712 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 PAPOLBQ9NRJ5 636 aaKnown RBP10.81□□□□□ -0.68
CLIP1-202ENST00000358808 STAP1Q9ULZ2 295 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 UBE4BO95155 1302 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 KIF28PB7ZC32 967 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 PFKFB2O60825 505 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 EFHC2Q5JST6 749 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 LRRC8EQ6NSJ5 796 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 EAF2Q96CJ1 260 aaPredicted RBP10.81□□□□□ -0.68
CLIP1-202ENST00000358808 PLEKHA8Q96JA3 519 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 SERPINB13Q9UIV8 391 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 CPS1P31327 1500 aa10.81□□□□□ -0.68
CLIP1-202ENST00000358808 ERVV-1B6SEH8 477 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 MEFVO15553 781 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-202ENST00000358808 DDHD2O94830 711 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 JAK3P52333 1124 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 NCALDP61601 193 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 MAPK6Q16659 721 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 PHKG1Q16816 387 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 ITPRIPL1Q6GPH6 555 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 LVRNQ6Q4G3 990 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 SMYD4Q8IYR2 804 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-202ENST00000358808 COA1Q9GZY4 146 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 LSM7Q9UK45 103 aaKnown RBP10.8□□□□□ -0.68
CLIP1-202ENST00000358808 hCG_1984214I3L0E3 225 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 SUPT3HO75486 399 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 DCTN3O75935 186 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 SERPING1P05155 500 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 GRIK1P39086 918 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 ZNF713Q8N859 430 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-202ENST00000358808 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.8□□□□□ -0.685e-7■■■■■ 48.1
CLIP1-202ENST00000358808 PALMDQ9NP74 551 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 MTMR6Q9Y217 621 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 DIAPH2O60879 1101 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 HIST1H2AGP0C0S8 130 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-202ENST00000358808 USP17L8P0C7I0 530 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 EPB42P16452 691 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 HIST1H2ADP20671 130 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 FASTKD1Q53R41 847 aaKnown RBP10.8□□□□□ -0.68
CLIP1-202ENST00000358808 ZC3H18Q86VM9 953 aaKnown RBP10.8□□□□□ -0.68
CLIP1-202ENST00000358808 HIST1H2AHQ96KK5 128 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 MMP19Q99542 508 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 HIST1H2AJQ99878 128 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 H2AFJQ9BTM1 129 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 ZCWPW1Q9H0M4 648 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 ARHGAP26Q9UNA1 814 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 A0A1B0GW55 424 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 NBNO60934 754 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 DUX4L2P0CJ85 424 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 DUX4L3P0CJ86 424 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 DUX4L4P0CJ87 422 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 DUX4L5P0CJ88 424 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 DUX4L6P0CJ89 424 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 DUX4L7P0CJ90 424 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 SPDYAQ5MJ70 313 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 C1orf146Q5VVC0 180 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 OOSP2Q86WS3 158 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 RHPN2Q8IUC4 686 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 SSH3Q8TE77 659 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 GCOM2Q9BZD3 368 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-202ENST00000358808 FAM96AQ9H5X1 160 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 DUX4Q9UBX2 424 aa10.8□□□□□ -0.68
CLIP1-202ENST00000358808 GYG2O15488 501 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 SRGAP2O75044 1071 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 ZFXP17010 805 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-202ENST00000358808 HMOX2P30519 316 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms