RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 DCAF17Q5H9S7 520 aaPredicted RBP20.41■□□□□ 0.86
CLN3-204ENST00000357857 GNASQ5JWF2 1037 aa20.41■□□□□ 0.86
CLN3-204ENST00000357857 POMGNT1Q8WZA1 660 aa20.41■□□□□ 0.86
CLN3-204ENST00000357857 PCMTD1Q96MG8 357 aaPredicted RBP20.41■□□□□ 0.86
CLN3-204ENST00000357857 CCDC113Q9H0I3 377 aa20.41■□□□□ 0.86
CLN3-204ENST00000357857 AKT3Q9Y243 479 aa20.41■□□□□ 0.86
CLN3-204ENST00000357857 AKR1B15C9JRZ8 316 aaPredicted RBP20.4■□□□□ 0.86
CLN3-204ENST00000357857 MAPK13O15264 365 aa20.4■□□□□ 0.86
CLN3-204ENST00000357857 PGK1P00558 417 aa20.4■□□□□ 0.86
CLN3-204ENST00000357857 AFPP02771 609 aaKnown RBP20.4■□□□□ 0.86
CLN3-204ENST00000357857 GYPCP04921 128 aa20.4■□□□□ 0.86
CLN3-204ENST00000357857 GOLGA8FQ08AF8 430 aa20.4■□□□□ 0.86
CLN3-204ENST00000357857 GOLGA8DPQ0D2H9 430 aa20.4■□□□□ 0.86
CLN3-204ENST00000357857 MAP3K21Q5TCX8 1036 aa20.4■□□□□ 0.86
CLN3-204ENST00000357857 TCERG1LQ5VWI1 586 aa20.4■□□□□ 0.86
CLN3-204ENST00000357857 RDH13Q8NBN7 331 aa20.4■□□□□ 0.86
CLN3-204ENST00000357857 MAP7D2Q96T17 732 aa20.4■□□□□ 0.86
CLN3-204ENST00000357857 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.4■□□□□ 0.86
CLN3-204ENST00000357857 SCN10AQ9Y5Y9 1956 aa20.39■□□□□ 0.86
CLN3-204ENST00000357857 ZEB2O60315 1214 aa20.39■□□□□ 0.86
CLN3-204ENST00000357857 PRMT2P55345 433 aa20.39■□□□□ 0.86
CLN3-204ENST00000357857 PTENP60484 403 aa20.39■□□□□ 0.86
CLN3-204ENST00000357857 POU5F1BQ06416 359 aa20.39■□□□□ 0.86
CLN3-204ENST00000357857 NFRKBQ6P4R8 1299 aa20.39■□□□□ 0.86
CLN3-204ENST00000357857 TC2NQ8N9U0 490 aa20.39■□□□□ 0.86
CLN3-204ENST00000357857 CPLX3Q8WVH0 158 aa20.39■□□□□ 0.86
CLN3-204ENST00000357857 SLC35C1Q96A29 364 aa20.39■□□□□ 0.86
CLN3-204ENST00000357857 MTG1Q9BT17 334 aaPredicted RBP20.39■□□□□ 0.86
CLN3-204ENST00000357857 NUP58Q9BVL2 599 aa20.39■□□□□ 0.86
CLN3-204ENST00000357857 XPNPEP3Q9NQH7 507 aa20.39■□□□□ 0.86
CLN3-204ENST00000357857 SIK3Q9Y2K2 1263 aa20.39■□□□□ 0.86
CLN3-204ENST00000357857 PRKCBP05771 671 aa20.39■□□□□ 0.85
CLN3-204ENST00000357857 KRT13P13646 458 aa20.39■□□□□ 0.85
CLN3-204ENST00000357857 CASP14P31944 242 aa20.39■□□□□ 0.85
CLN3-204ENST00000357857 PHKA2P46019 1235 aa20.39■□□□□ 0.85
CLN3-204ENST00000357857 KLK7P49862 253 aa20.39■□□□□ 0.85
CLN3-204ENST00000357857 ADKP55263 362 aaKnown RBP20.39■□□□□ 0.85
CLN3-204ENST00000357857 MAPK6Q16659 721 aa20.39■□□□□ 0.85
CLN3-204ENST00000357857 INTS8Q75QN2 995 aaKnown RBP20.39■□□□□ 0.85
CLN3-204ENST00000357857 CCDC155Q8N6L0 562 aa20.39■□□□□ 0.85
CLN3-204ENST00000357857 ZSWIM2Q8NEG5 633 aa20.39■□□□□ 0.85
CLN3-204ENST00000357857 ZNF668Q96K58 619 aaPredicted RBP20.39■□□□□ 0.85
CLN3-204ENST00000357857 TARS2Q9BW92 718 aaKnown RBP20.39■□□□□ 0.85
CLN3-204ENST00000357857 MRPL4Q9BYD3 311 aaKnown RBP20.39■□□□□ 0.85
CLN3-204ENST00000357857 NFKBIZQ9BYH8 718 aa20.39■□□□□ 0.85
CLN3-204ENST00000357857 USP20Q9Y2K6 914 aa20.39■□□□□ 0.85
CLN3-204ENST00000357857 STYXL1Q9Y6J8 313 aa20.39■□□□□ 0.85
CLN3-204ENST00000357857 GOLGA8IPA6NC78 632 aa20.38■□□□□ 0.85
CLN3-204ENST00000357857 GOLGA8JA6NMD2 632 aa20.38■□□□□ 0.85
CLN3-204ENST00000357857 ESPNB1AK53 854 aa20.38■□□□□ 0.85
CLN3-204ENST00000357857 MSCO60682 206 aa20.38■□□□□ 0.85
CLN3-204ENST00000357857 ADAMTS4O75173 837 aa20.38■□□□□ 0.85
CLN3-204ENST00000357857 VTNP04004 478 aa20.38■□□□□ 0.85
CLN3-204ENST00000357857 EDN1P05305 212 aa20.38■□□□□ 0.85
CLN3-204ENST00000357857 MSNP26038 577 aaKnown RBP20.38■□□□□ 0.85
CLN3-204ENST00000357857 CCZ1BP86790 482 aa20.38■□□□□ 0.85
CLN3-204ENST00000357857 CCZ1P86791 482 aaPredicted RBP20.38■□□□□ 0.85
CLN3-204ENST00000357857 MAP2K1Q02750 393 aaPredicted RBP20.38■□□□□ 0.85
CLN3-204ENST00000357857 BFSP1Q12934 665 aa20.38■□□□□ 0.85
CLN3-204ENST00000357857 SLFN12LQ6IEE8 588 aa20.38■□□□□ 0.85
CLN3-204ENST00000357857 ZPBP2Q6X784 338 aa20.38■□□□□ 0.85
CLN3-204ENST00000357857 CNGA4Q8IV77 575 aa20.38■□□□□ 0.85
CLN3-204ENST00000357857 SLAIN1Q8ND83 568 aa20.38■□□□□ 0.85
CLN3-204ENST00000357857 PPP1R13LQ8WUF5 828 aa20.38■□□□□ 0.85
CLN3-204ENST00000357857 SAAL1Q96ER3 474 aa20.38■□□□□ 0.85
CLN3-204ENST00000357857 BEGAINQ9BUH8 593 aa20.38■□□□□ 0.85
CLN3-204ENST00000357857 MBLAC1A4D2B0 266 aaPredicted RBP20.37■□□□□ 0.85
CLN3-204ENST00000357857 KIAA0391O15091 583 aaKnown RBP20.37■□□□□ 0.85
CLN3-204ENST00000357857 NRDCO43847 1150 aa20.37■□□□□ 0.85
CLN3-204ENST00000357857 MFAP3LO75121 409 aa20.37■□□□□ 0.85
CLN3-204ENST00000357857 TRIM21P19474 475 aaKnown RBP20.37■□□□□ 0.85
CLN3-204ENST00000357857 FXR1P51114 621 aaKnown RBP eCLIP20.37■□□□□ 0.85
CLN3-204ENST00000357857 IFNLR1Q8IU57 520 aaPredicted RBP20.37■□□□□ 0.85
CLN3-204ENST00000357857 KIAA0319LQ8IZA0 1049 aa20.37■□□□□ 0.85
CLN3-204ENST00000357857 GPD1LQ8N335 351 aa20.37■□□□□ 0.85
CLN3-204ENST00000357857 IQCDQ96DY2 449 aa20.37■□□□□ 0.85
CLN3-204ENST00000357857 FBXL18Q96ME1 805 aa20.37■□□□□ 0.85
CLN3-204ENST00000357857 TSKSQ9UJT2 592 aa20.37■□□□□ 0.85
CLN3-204ENST00000357857 A0A087WZ62 844 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 INO80B-WBP1J3KQ70 363 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 ADRB2P07550 413 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 ADAM17P78536 824 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 MBTD1Q05BQ5 628 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 KCNMA1Q12791 1236 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 SNRNP35Q16560 246 aaKnown RBP20.36■□□□□ 0.85
CLN3-204ENST00000357857 FIGNQ5HY92 759 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 CBWD2Q8IUF1 395 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 C7orf31Q8N865 590 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 CCDC112Q8NEF3 446 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 FDXACB1Q9BRP7 624 aaPredicted RBP20.36■□□□□ 0.85
CLN3-204ENST00000357857 INO80BQ9C086 356 aaPredicted RBP20.36■□□□□ 0.85
CLN3-204ENST00000357857 FZD8Q9H461 694 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 MMRN2Q9H8L6 949 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 IFT122Q9HBG6 1241 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 DDX20Q9UHI6 824 aaKnown RBP20.36■□□□□ 0.85
CLN3-204ENST00000357857 SMIM35A0A1B0GVV1 85 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 TTC26A0AVF1 554 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 C17orf102A2RUQ5 167 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 GNAT1P11488 350 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 CYP2C9P11712 490 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms