RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ROPN1BQ9BZX4 212 aaPredicted RBP7.31□□□□□ -1.24
VPS39-202ENST00000348544 THAP2Q9H0W7 228 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 ROPN1Q9HAT0 212 aaPredicted RBP7.31□□□□□ -1.24
VPS39-202ENST00000348544 USP40Q9NVE5 1235 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 HAO1Q9UJM8 370 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 CHKBQ9Y259 395 aa7.31□□□□□ -1.24
VPS39-202ENST00000348544 POTEB3A0JP26 581 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 SIGLEC16A6NMB1 481 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 POTECB2RU33 542 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 ENTPD5O75356 428 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 BRAFP15056 766 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 RASA1P20936 1047 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 EPHB2P29323 1055 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 CNGA1P29973 690 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 CHKAP35790 457 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 KLC1Q07866 573 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 ADCY1Q08828 1119 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 CTTNQ14247 550 aaKnown RBP7.3□□□□□ -1.24
VPS39-202ENST00000348544 PDCD2Q16342 344 aaPredicted RBP7.3□□□□□ -1.24
VPS39-202ENST00000348544 CCDC137Q6PK04 289 aaKnown RBP7.3□□□□□ -1.24
VPS39-202ENST00000348544 POTEBQ6S5H4 581 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 C3orf67Q6ZVT6 689 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 CCDC65Q8IXS2 484 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 ERP27Q96DN0 273 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 SERPINB12Q96P63 405 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 EPAS1Q99814 870 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 LZTS2Q9BRK4 669 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 RAB34Q9BZG1 259 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 KIAA1683Q9H0B3 1180 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 DENND2DQ9H6A0 471 aaPredicted RBP7.3□□□□□ -1.24
VPS39-202ENST00000348544 TXLNGQ9NUQ3 528 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 DLGAP2Q9P1A6 1054 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 JAG2Q9Y219 1238 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 PTPN22Q9Y2R2 807 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 PHLPP1O60346 1717 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 ESYT2A0FGR8 921 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 TULP1O00294 542 aaPredicted RBP7.3□□□□□ -1.24
VPS39-202ENST00000348544 NTSR2O95665 410 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 BAG3O95817 575 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 PYGLP06737 847 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 PLA2G4BP0C869 781 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 XRCC5P13010 732 aaKnown RBP7.3□□□□□ -1.24
VPS39-202ENST00000348544 KCNJ1P48048 391 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 LAMB3Q13751 1172 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 UBE4AQ14139 1066 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 SIX1Q15475 284 aaPredicted RBP7.3□□□□□ -1.24
VPS39-202ENST00000348544 TCERG1LQ5VWI1 586 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 CPNE8Q86YQ8 564 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 AGGF1Q8N302 714 aaeCLIP7.3□□□□□ -1.24
VPS39-202ENST00000348544 DNAJC9Q8WXX5 260 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 CTNNBL1Q8WYA6 563 aaPredicted RBP7.3□□□□□ -1.24
VPS39-202ENST00000348544 COA7Q96BR5 231 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 MAGEB18Q96M61 343 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 TBC1D10AQ9BXI6 508 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 GPR88Q9GZN0 384 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 UBA5Q9GZZ9 404 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 BCAS3Q9H6U6 928 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 MKNK2Q9HBH9 465 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 PCMTD2Q9NV79 361 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 PARP2Q9UGN5 583 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 SEC63Q9UGP8 760 aaKnown RBP7.3□□□□□ -1.24
VPS39-202ENST00000348544 KIAA1024Q9UPX6 916 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 NIP7Q9Y221 180 aaKnown RBP eCLIP7.3□□□□□ -1.24
VPS39-202ENST00000348544 TRAF3IP3Q9Y228 551 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 ALG6Q9Y672 507 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 PITPNM2Q9BZ72 1349 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 ROBO3Q96MS0 1386 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 ITGB4P16144 1822 aa7.3□□□□□ -1.24
VPS39-202ENST00000348544 PODXLO00592 558 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 CHRNB2P17787 502 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 STX2P32856 288 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 SOX5P35711 763 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 IL6STP40189 918 aaPredicted RBP7.29□□□□□ -1.24
VPS39-202ENST00000348544 POLGP54098 1239 aaPredicted RBP7.29□□□□□ -1.24
VPS39-202ENST00000348544 MKRN3Q13064 507 aaKnown RBP7.29□□□□□ -1.24
VPS39-202ENST00000348544 CAVIN4Q5BKX8 364 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 ZC3H12AQ5D1E8 599 aaKnown RBP7.29□□□□□ -1.24
VPS39-202ENST00000348544 HYIQ5T013 277 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 TMEM63BQ5T3F8 832 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 TRMT10CQ7L0Y3 403 aaKnown RBP7.29□□□□□ -1.24
VPS39-202ENST00000348544 LONP2Q86WA8 852 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 SNED1Q8TER0 1413 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 C7orf43Q8WVR3 580 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 SPOCK2Q92563 424 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 EZH1Q92800 747 aaPredicted RBP7.29□□□□□ -1.24
VPS39-202ENST00000348544 ZNF333Q96JL9 665 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 RUNDC3BQ96NL0 473 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 SYNGAP1Q96PV0 1343 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 GORASP1Q9BQQ3 440 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 IKZF4Q9H2S9 585 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 ZHX3Q9H4I2 956 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 PRDM11Q9NQV5 511 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 BMP2KQ9NSY1 1161 aaPredicted RBP7.29□□□□□ -1.24
VPS39-202ENST00000348544 DNAJC17Q9NVM6 304 aaKnown RBP7.29□□□□□ -1.24
VPS39-202ENST00000348544 NMRK1Q9NWW6 199 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 ASTN1O14525 1302 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 CBX6O95503 412 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 EYA4O95677 639 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 TTLL1O95922 423 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 PYGMP11217 842 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms