RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 ANXA13P27216 316 aa24.13■■□□□ 1.45
TRIM28-202ENST00000341753 QRICH1Q2TAL8 776 aa24.13■■□□□ 1.45
TRIM28-202ENST00000341753 AGAP11Q8TF27 550 aa24.13■■□□□ 1.45
TRIM28-202ENST00000341753 SLC20A1Q8WUM9 679 aa24.13■■□□□ 1.45
TRIM28-202ENST00000341753 FGFR1OP2Q9NVK5 253 aa24.13■■□□□ 1.45
TRIM28-202ENST00000341753 KCNJ1P48048 391 aa24.12■■□□□ 1.45
TRIM28-202ENST00000341753 CYP2J2P51589 502 aa24.12■■□□□ 1.45
TRIM28-202ENST00000341753 ZNF746Q6NUN9 644 aaPredicted RBP24.12■■□□□ 1.45
TRIM28-202ENST00000341753 RDH13Q8NBN7 331 aa24.12■■□□□ 1.45
TRIM28-202ENST00000341753 DYDC1Q8WWB3 177 aa24.12■■□□□ 1.45
TRIM28-202ENST00000341753 NAP1L3Q99457 506 aaPredicted RBP24.12■■□□□ 1.45
TRIM28-202ENST00000341753 UTP3Q9NQZ2 479 aaKnown RBP eCLIP24.12■■□□□ 1.452e-7■■■□□ 18.8
TRIM28-202ENST00000341753 RASAL2Q9UJF2 1139 aa24.12■■□□□ 1.45
TRIM28-202ENST00000341753 ANP32DO95626 131 aa24.12■■□□□ 1.45
TRIM28-202ENST00000341753 NPR1P16066 1061 aa24.12■■□□□ 1.45
TRIM28-202ENST00000341753 DHX34Q14147 1143 aaKnown RBP24.12■■□□□ 1.45
TRIM28-202ENST00000341753 CNGA2Q16280 664 aa24.12■■□□□ 1.45
TRIM28-202ENST00000341753 LONRF1Q17RB8 773 aa24.12■■□□□ 1.45
TRIM28-202ENST00000341753 STK33Q9BYT3 514 aa24.12■■□□□ 1.45
TRIM28-202ENST00000341753 CTTNBP2NLQ9P2B4 639 aa24.12■■□□□ 1.45
TRIM28-202ENST00000341753 MYO3BQ8WXR4 1341 aa24.12■■□□□ 1.45
TRIM28-202ENST00000341753 RASGRF2O14827 1237 aa24.12■■□□□ 1.45
TRIM28-202ENST00000341753 GDF11O95390 407 aa24.12■■□□□ 1.45
TRIM28-202ENST00000341753 AUHQ13825 339 aaKnown RBP24.12■■□□□ 1.45
TRIM28-202ENST00000341753 C6orf118Q5T5N4 469 aa24.12■■□□□ 1.45
TRIM28-202ENST00000341753 POP1Q99575 1024 aaKnown RBP24.12■■□□□ 1.45
TRIM28-202ENST00000341753 A0A1B0GUA9 196 aa24.11■■□□□ 1.45
TRIM28-202ENST00000341753 SLC16A3O15427 465 aaKnown RBP24.11■■□□□ 1.45
TRIM28-202ENST00000341753 PHF2O75151 1096 aa24.11■■□□□ 1.45
TRIM28-202ENST00000341753 AGTP01019 485 aa24.11■■□□□ 1.45
TRIM28-202ENST00000341753 FMO5P49326 533 aa24.11■■□□□ 1.45
TRIM28-202ENST00000341753 ARHGAP4P98171 946 aa24.11■■□□□ 1.45
TRIM28-202ENST00000341753 SPDYCQ5MJ68 293 aa24.11■■□□□ 1.45
TRIM28-202ENST00000341753 CYP2W1Q8TAV3 490 aa24.11■■□□□ 1.45
TRIM28-202ENST00000341753 ETNPPLQ8TBG4 499 aa24.11■■□□□ 1.45
TRIM28-202ENST00000341753 BORCS6Q96GS4 357 aa24.11■■□□□ 1.45
TRIM28-202ENST00000341753 DDX23Q9BUQ8 820 aaKnown RBP24.11■■□□□ 1.45
TRIM28-202ENST00000341753 ECT2Q9H8V3 914 aa24.11■■□□□ 1.45
TRIM28-202ENST00000341753 TCP11X1B4DZS4 312 aa24.11■■□□□ 1.45
TRIM28-202ENST00000341753 ZBTB39O15060 712 aa24.11■■□□□ 1.45
TRIM28-202ENST00000341753 RIPK2O43353 540 aa24.11■■□□□ 1.45
TRIM28-202ENST00000341753 HLA-DOAP06340 250 aa24.11■■□□□ 1.45
TRIM28-202ENST00000341753 GSTA1P08263 222 aa24.11■■□□□ 1.45
TRIM28-202ENST00000341753 EEF2P13639 858 aaKnown RBP24.11■■□□□ 1.45
TRIM28-202ENST00000341753 ALDH5A1P51649 535 aaPredicted RBP24.11■■□□□ 1.45
TRIM28-202ENST00000341753 NCALDP61601 193 aa24.11■■□□□ 1.45
TRIM28-202ENST00000341753 ADCY2Q08462 1091 aa24.11■■□□□ 1.45
TRIM28-202ENST00000341753 CCDC137Q6PK04 289 aaKnown RBP24.11■■□□□ 1.45
TRIM28-202ENST00000341753 FAXDC2Q96IV6 333 aa24.11■■□□□ 1.45
TRIM28-202ENST00000341753 STK38LQ9Y2H1 464 aa24.11■■□□□ 1.45
TRIM28-202ENST00000341753 ATMINO43313 823 aaPredicted RBP24.1■■□□□ 1.45
TRIM28-202ENST00000341753 RARAP10276 462 aa24.1■■□□□ 1.45
TRIM28-202ENST00000341753 CRYMQ14894 314 aa24.1■■□□□ 1.45
TRIM28-202ENST00000341753 FOCADQ5VW36 1801 aa24.1■■□□□ 1.45
TRIM28-202ENST00000341753 SLFN12Q8IYM2 578 aa24.1■■□□□ 1.45
TRIM28-202ENST00000341753 ANKRD42Q8N9B4 389 aa24.1■■□□□ 1.45
TRIM28-202ENST00000341753 TRIM33Q9UPN9 1127 aa24.1■■□□□ 1.45
TRIM28-202ENST00000341753 ZMYM2Q9UBW7 1377 aa24.1■■□□□ 1.45
TRIM28-202ENST00000341753 FAM86B1E9PN63 330 aa24.1■■□□□ 1.45
TRIM28-202ENST00000341753 IGF2BP3O00425 579 aaKnown RBP eCLIP24.1■■□□□ 1.45
TRIM28-202ENST00000341753 SNX3O60493 162 aa24.1■■□□□ 1.45
TRIM28-202ENST00000341753 FAM86B2P0C5J1 330 aa24.1■■□□□ 1.45
TRIM28-202ENST00000341753 RPA1P27694 616 aa24.1■■□□□ 1.45
TRIM28-202ENST00000341753 MESDQ14696 234 aa24.1■■□□□ 1.45
TRIM28-202ENST00000341753 ZKSCAN8Q15776 578 aaPredicted RBP24.1■■□□□ 1.45
TRIM28-202ENST00000341753 SH3BP5LQ7L8J4 393 aa24.1■■□□□ 1.45
TRIM28-202ENST00000341753 EXOC3L1Q86VI1 746 aa24.1■■□□□ 1.45
TRIM28-202ENST00000341753 MYCT1Q8N699 235 aa24.1■■□□□ 1.45
TRIM28-202ENST00000341753 ERMNQ8TAM6 284 aa24.1■■□□□ 1.45
TRIM28-202ENST00000341753 RSRC1Q96IZ7 334 aaKnown RBP24.1■■□□□ 1.45
TRIM28-202ENST00000341753 SYT11Q9BT88 431 aa24.1■■□□□ 1.45
TRIM28-202ENST00000341753 INTS2Q9H0H0 1204 aaKnown RBP24.1■■□□□ 1.45
TRIM28-202ENST00000341753 DNAJC17Q9NVM6 304 aaKnown RBP24.1■■□□□ 1.45
TRIM28-202ENST00000341753 PNMA3Q9UL41 463 aa24.1■■□□□ 1.45
TRIM28-202ENST00000341753 UTRNP46939 3433 aa24.1■■□□□ 1.45
TRIM28-202ENST00000341753 FOXN3O00409 490 aaPredicted RBP24.09■■□□□ 1.45
TRIM28-202ENST00000341753 ACSL3O95573 720 aa24.09■■□□□ 1.45
TRIM28-202ENST00000341753 SPICE1Q8N0Z3 855 aa24.09■■□□□ 1.45
TRIM28-202ENST00000341753 MTRF1LQ9UGC7 380 aaKnown RBP24.09■■□□□ 1.45
TRIM28-202ENST00000341753 LRRC37AA6NMS7 1700 aa24.09■■□□□ 1.45
TRIM28-202ENST00000341753 MYCNP04198 464 aaPredicted RBP24.09■■□□□ 1.45
TRIM28-202ENST00000341753 NQO1P15559 274 aaKnown RBP24.09■■□□□ 1.45
TRIM28-202ENST00000341753 PSMC2P35998 433 aaKnown RBP24.09■■□□□ 1.45
TRIM28-202ENST00000341753 CTTNQ14247 550 aaKnown RBP24.09■■□□□ 1.45
TRIM28-202ENST00000341753 USH1GQ495M9 461 aa24.09■■□□□ 1.45
TRIM28-202ENST00000341753 CCDC105Q8IYK2 499 aa24.09■■□□□ 1.45
TRIM28-202ENST00000341753 GDAP1Q8TB36 358 aa24.09■■□□□ 1.45
TRIM28-202ENST00000341753 BTBD6Q96KE9 485 aa24.09■■□□□ 1.45
TRIM28-202ENST00000341753 CTNNAL1Q9UBT7 734 aa24.09■■□□□ 1.45
TRIM28-202ENST00000341753 DIS3Q9Y2L1 958 aaKnown RBP24.09■■□□□ 1.45
TRIM28-202ENST00000341753 BRWD3Q6RI45 1802 aa24.08■■□□□ 1.45
TRIM28-202ENST00000341753 KIF13BQ9NQT8 1826 aa24.08■■□□□ 1.45
TRIM28-202ENST00000341753 ADCY1Q08828 1119 aa24.08■■□□□ 1.45
TRIM28-202ENST00000341753 PPP2R5AQ15172 486 aa24.08■■□□□ 1.45
TRIM28-202ENST00000341753 NLGN1Q8N2Q7 840 aa24.08■■□□□ 1.45
TRIM28-202ENST00000341753 NSRP1Q9H0G5 558 aaKnown RBP24.08■■□□□ 1.45
TRIM28-202ENST00000341753 EML1O00423 815 aa24.08■■□□□ 1.44
TRIM28-202ENST00000341753 MEIS2O14770 477 aa24.08■■□□□ 1.44
TRIM28-202ENST00000341753 EBF2Q9HAK2 575 aa24.08■■□□□ 1.44
TRIM28-202ENST00000341753 FAM198AQ9UFP1 575 aa24.08■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms