RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 MRPL11Q9Y3B7 192 aaKnown RBP13.58□□□□□ -0.24
USP47-202ENST00000339865 IQCA1LA6NCM1 817 aa13.58□□□□□ -0.24
USP47-202ENST00000339865 CAND2O75155 1236 aa13.58□□□□□ -0.24
USP47-202ENST00000339865 PLEKHA7Q6IQ23 1121 aa13.58□□□□□ -0.24
USP47-202ENST00000339865 DHTKD1Q96HY7 919 aaPredicted RBP13.58□□□□□ -0.24
USP47-202ENST00000339865 CUEDC2Q9H467 287 aa13.58□□□□□ -0.24
USP47-202ENST00000339865 SAMSN1Q9NSI8 373 aaKnown RBP13.58□□□□□ -0.24
USP47-202ENST00000339865 HPS5Q9UPZ3 1129 aa13.58□□□□□ -0.24
USP47-202ENST00000339865 DTNAQ9Y4J8 743 aa13.58□□□□□ -0.24
USP47-202ENST00000339865 MFN2O95140 757 aa13.58□□□□□ -0.24
USP47-202ENST00000339865 GCFC2P16383 781 aaKnown RBP13.58□□□□□ -0.24
USP47-202ENST00000339865 PSMA3P25788 255 aa13.58□□□□□ -0.24
USP47-202ENST00000339865 FAM160B1Q5W0V3 765 aa13.58□□□□□ -0.24
USP47-202ENST00000339865 POTEEQ6S8J3 1075 aa13.58□□□□□ -0.24
USP47-202ENST00000339865 ARL10Q8N8L6 244 aa13.58□□□□□ -0.24
USP47-202ENST00000339865 DPF3Q92784 378 aa13.58□□□□□ -0.24
USP47-202ENST00000339865 P2RX5Q93086 422 aa13.58□□□□□ -0.24
USP47-202ENST00000339865 ZSCAN10Q96SZ4 725 aaPredicted RBP13.58□□□□□ -0.24
USP47-202ENST00000339865 HDHD2Q9H0R4 259 aa13.58□□□□□ -0.24
USP47-202ENST00000339865 CCDC134Q9H6E4 229 aa13.58□□□□□ -0.24
USP47-202ENST00000339865 FAM107AO95990 144 aa13.58□□□□□ -0.24
USP47-202ENST00000339865 DPP8Q6V1X1 898 aaPredicted RBP13.58□□□□□ -0.24
USP47-202ENST00000339865 FAM162AQ96A26 154 aa13.58□□□□□ -0.24
USP47-202ENST00000339865 VPS50Q96JG6 964 aa13.58□□□□□ -0.24
USP47-202ENST00000339865 CAAP1Q9H8G2 361 aa13.58□□□□□ -0.24
USP47-202ENST00000339865 SOS2Q07890 1332 aaPredicted RBP13.58□□□□□ -0.24
USP47-202ENST00000339865 TYK2P29597 1187 aa13.58□□□□□ -0.24
USP47-202ENST00000339865 SPATA5Q8NB90 893 aa13.58□□□□□ -0.24
USP47-202ENST00000339865 CYP19A1P11511 503 aaPredicted RBP13.57□□□□□ -0.24
USP47-202ENST00000339865 CHRNA3P32297 505 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 KRT24Q2M2I5 525 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 AKAP4Q5JQC9 854 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 ERICH1Q86X53 443 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 PPP1R16BQ96T49 567 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 GOLPH3LQ9H4A5 285 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 RWDD3Q9Y3V2 267 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 MAP3K15Q6ZN16 1313 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 ZNF839A8K0R7 811 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 DDX5P17844 614 aaKnown RBP13.57□□□□□ -0.24
USP47-202ENST00000339865 HMOX2P30519 316 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 CNBD1Q8NA66 436 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 MCRS1Q96EZ8 462 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 ZCCHC17Q9NP64 241 aaKnown RBP13.57□□□□□ -0.24
USP47-202ENST00000339865 GAPVD1Q14C86 1478 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 ABCE1P61221 599 aaKnown RBP13.57□□□□□ -0.24
USP47-202ENST00000339865 CSTF3Q12996 717 aaKnown RBP13.57□□□□□ -0.24
USP47-202ENST00000339865 TFDP1Q14186 410 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 PPP1R2P3Q6NXS1 205 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 ZNF577Q9BSK1 485 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 NCALDP61601 193 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 PKP1Q13835 747 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 CYP26B1Q9NR63 512 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 GTF2A1LQ9UNN4 478 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 NSD2O96028 1365 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 FAM45BPQ6NSW5 357 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 SDR42E1Q8WUS8 393 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 GRAMD1AQ96CP6 724 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 COG2Q14746 738 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 ZNF274Q96GC6 653 aaPredicted RBP13.57□□□□□ -0.24
USP47-202ENST00000339865 IL1RL2Q9HB29 575 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 ALBP02768 609 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 ZSCAN20P17040 1043 aaPredicted RBP13.57□□□□□ -0.24
USP47-202ENST00000339865 CACNB1Q02641 598 aaPredicted RBP13.57□□□□□ -0.24
USP47-202ENST00000339865 ZNF658Q5TYW1 1059 aaPredicted RBP13.57□□□□□ -0.24
USP47-202ENST00000339865 ANKS3Q6ZW76 656 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.57□□□□□ -0.244e-6■□□□□ 8
USP47-202ENST00000339865 C17orf80Q9BSJ5 609 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 BCL2L14Q9BZR8 327 aa13.57□□□□□ -0.24
USP47-202ENST00000339865 REXO4Q9GZR2 422 aaKnown RBP13.57□□□□□ -0.24
USP47-202ENST00000339865 EHBP1L1Q8N3D4 1523 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 AIM2O14862 343 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 BIRC5O15392 142 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 CDC40O60508 579 aaKnown RBP eCLIP13.56□□□□□ -0.24
USP47-202ENST00000339865 IL12RB1P42701 662 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 ALFQ53S48 1182 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 TTC33Q6PID6 262 aaPredicted RBP13.56□□□□□ -0.24
USP47-202ENST00000339865 BTN2A1Q7KYR7 527 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 ARMCX2Q7L311 632 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 PODNQ7Z5L7 613 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 GRAMD1CQ8IYS0 662 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 ACCSQ96QU6 501 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 NRBP2Q9NSY0 501 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 ADAMTS1Q9UHI8 967 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 PCP4L1A6NKN8 68 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 TSPYL6Q8N831 410 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 PNMA1Q8ND90 353 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 MDM1Q8TC05 714 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 SLC7A3Q8WY07 619 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 TOP2AP11388 1531 aaKnown RBP13.56□□□□□ -0.24
USP47-202ENST00000339865 KRT16P08779 473 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 PDCD10Q9BUL8 212 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 MAN1B1Q9UKM7 699 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 SYNJ2O15056 1496 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 NINQ8N4C6 2090 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 UBN2Q6ZU65 1347 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 PPP3CCP48454 512 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 C16orf72Q14CZ0 275 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 DENND6AQ8IWF6 608 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 BBS7Q8IWZ6 715 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 CNDP1Q96KN2 507 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms