RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 H3BRB1 525 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 PPP2R5EQ16537 467 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 CC2D1AQ6P1N0 951 aaPredicted RBP10.92□□□□□ -0.66
USP54-201ENST00000339859 TAF2Q6P1X5 1199 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 CCDC105Q8IYK2 499 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 TMEM199Q8N511 208 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 FAM133AQ8N9E0 248 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 RUNDC3BQ96NL0 473 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 INTS2Q9H0H0 1204 aaKnown RBP10.92□□□□□ -0.66
USP54-201ENST00000339859 TUT1Q9H6E5 874 aaKnown RBP10.92□□□□□ -0.66
USP54-201ENST00000339859 ZKSCAN5Q9Y2L8 839 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 FAM205CA6NFA0 338 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 GOLGA8CPA6NN73 597 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 KIAA0754O94854 1291 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 TUBBP07437 444 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 ITIH3Q06033 890 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 CATSPER3Q86XQ3 398 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 EXTL3O43909 919 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 CLTAP09496 248 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 GRIK1P39086 918 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 PRCPP42785 496 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 DGKZQ13574 1117 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 FBXL16Q8N461 479 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 ATP8B4Q8TF62 1192 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 SENP6Q9GZR1 1112 aaPredicted RBP10.92□□□□□ -0.66
USP54-201ENST00000339859 A1CFQ9NQ94 594 aaKnown RBP10.92□□□□□ -0.66
USP54-201ENST00000339859 DNAJC12Q9UKB3 198 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 KDM3BQ7LBC6 1761 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 CALB1P05937 261 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 CYP11B2P19099 503 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 STILQ15468 1287 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 TMEM35BQ8NCS4 154 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 EEF2KMTQ96G04 330 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 PRIMPOLQ96LW4 560 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 GOLPH3LQ9H4A5 285 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 M0QYV0 167 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 SLC37A4O43826 429 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 IFT81Q8WYA0 676 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 CEP72Q9P209 647 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.91□□□□□ -0.66
USP54-201ENST00000339859 AFG3L2Q9Y4W6 797 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 RGPD1P0DJD0 1748 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.91□□□□□ -0.66
USP54-201ENST00000339859 C8orf74Q6P047 294 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 SHC4Q6S5L8 630 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 C4orf19Q8IY42 314 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 FMR1NBQ8N0W7 255 aaPredicted RBP10.91□□□□□ -0.66
USP54-201ENST00000339859 TSPYL1Q9H0U9 437 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 IL25Q9H293 177 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 PPANQ9NQ55 473 aaKnown RBP10.91□□□□□ -0.66
USP54-201ENST00000339859 PPFIA4O75335 1185 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 PRR29P0C7W0 189 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 ADCYAP1R1P41586 468 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 TMEM270Q6UE05 265 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 C11orf57Q6ZUT1 292 aaPredicted RBP10.91□□□□□ -0.66
USP54-201ENST00000339859 NDUFAF2Q8N183 169 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 ENTPD7Q9NQZ7 604 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 PCDHB12Q9Y5F1 795 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 STRCP1A6NGW2 1772 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 KLRC1P26715 233 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 ATP5DP30049 168 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 MSL3Q8N5Y2 521 aaKnown RBP10.91□□□□□ -0.66
USP54-201ENST00000339859 AGAP1Q9UPQ3 857 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 ARFGEF2Q9Y6D5 1785 aa10.91□□□□□ -0.66
USP54-201ENST00000339859 PRRG1O14668 218 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 CYP2C19P33261 490 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 ARHGAP15Q53QZ3 475 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 SGO2Q562F6 1265 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 C4orf50Q6ZRC1 276 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 MICALL1Q8N3F8 863 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 SYT2Q8N9I0 419 aaPredicted RBP10.9□□□□□ -0.66
USP54-201ENST00000339859 CYP39A1Q9NYL5 469 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 DBR1Q9UK59 544 aaKnown RBP10.9□□□□□ -0.66
USP54-201ENST00000339859 SLC45A1Q9Y2W3 748 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 TRPV2Q9Y5S1 764 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 COL1A1P02452 1464 aaPredicted RBP10.9□□□□□ -0.66
USP54-201ENST00000339859 ODC1P11926 461 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 PRKAR2AP13861 404 aaKnown RBP10.9□□□□□ -0.66
USP54-201ENST00000339859 ADORA2BP29275 332 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 CASP14P31944 242 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 CASC4Q6P4E1 433 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 CD99L2Q8TCZ2 262 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 POLD4Q9HCU8 107 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 KANSL3Q9P2N6 904 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 DPP7Q9UHL4 492 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 TAF6LQ9Y6J9 622 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 A0A0G2JLL6 359 aaPredicted RBP10.9□□□□□ -0.66
USP54-201ENST00000339859 OPA1O60313 960 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 CTDNEP1O95476 244 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 ZBED6P86452 979 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 PRRT2Q7Z6L0 340 aaPredicted RBP10.9□□□□□ -0.66
USP54-201ENST00000339859 DEFB128Q7Z7B8 93 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 FBXL13Q8NEE6 735 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 TMEM169Q96HH4 297 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 SAMSN1Q9NSI8 373 aaKnown RBP10.9□□□□□ -0.66
USP54-201ENST00000339859 SART1O43290 800 aaKnown RBP10.9□□□□□ -0.66
USP54-201ENST00000339859 FDPSP14324 419 aaKnown RBP10.9□□□□□ -0.66
USP54-201ENST00000339859 LRRC31Q6UY01 552 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 KCTD6Q8NC69 237 aa10.9□□□□□ -0.66
USP54-201ENST00000339859 UBQLN1Q9UMX0 589 aaKnown RBP10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms