RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.5■□□□□ 0.39
CLN3-201ENST00000333496 ABI1Q8IZP0 508 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 KLHL23Q8NBE8 558 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 SMG8Q8ND04 991 aaKnown RBP17.5■□□□□ 0.39
CLN3-201ENST00000333496 FOXD4L4Q8WXT5 416 aaPredicted RBP17.5■□□□□ 0.39
CLN3-201ENST00000333496 EPSTI1Q96J88 318 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 CDK5RAP3Q96JB5 506 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 KIFC3Q9BVG8 833 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 EIF2AQ9BY44 585 aaKnown RBP17.5■□□□□ 0.39
CLN3-201ENST00000333496 CCDC113Q9H0I3 377 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 BLOC1S4Q9NUP1 217 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 MORC2Q9Y6X9 1032 aaPredicted RBP17.5■□□□□ 0.39
CLN3-201ENST00000333496 TRIP11Q15643 1979 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 TCHHQ07283 1943 aa17.49■□□□□ 0.39
CLN3-201ENST00000333496 PLA2G4BP0C869 781 aa17.49■□□□□ 0.39
CLN3-201ENST00000333496 ZSCAN22P10073 491 aaPredicted RBP17.49■□□□□ 0.39
CLN3-201ENST00000333496 DNAJB1P25685 340 aa17.49■□□□□ 0.39
CLN3-201ENST00000333496 NASPP49321 788 aaPredicted RBP17.49■□□□□ 0.39
CLN3-201ENST00000333496 SLC39A14Q15043 492 aa17.49■□□□□ 0.39
CLN3-201ENST00000333496 KARSQ15046 597 aaKnown RBP17.49■□□□□ 0.39
CLN3-201ENST00000333496 FAM187BQ17R55 369 aa17.49■□□□□ 0.39
CLN3-201ENST00000333496 PPP4R3CPQ6ZMV5 832 aa17.49■□□□□ 0.39
CLN3-201ENST00000333496 CDR2LQ86X02 465 aaPredicted RBP17.49■□□□□ 0.39
CLN3-201ENST00000333496 COLGALT1Q8NBJ5 622 aa17.49■□□□□ 0.39
CLN3-201ENST00000333496 SPPL3Q8TCT6 385 aa17.49■□□□□ 0.39
CLN3-201ENST00000333496 CALML4Q96GE6 196 aa17.49■□□□□ 0.39
CLN3-201ENST00000333496 CCSER1Q9C0I3 900 aa17.49■□□□□ 0.39
CLN3-201ENST00000333496 PRMT7Q9NVM4 692 aaPredicted RBP17.49■□□□□ 0.39
CLN3-201ENST00000333496 BRWD1Q9NSI6 2320 aa17.49■□□□□ 0.39
CLN3-201ENST00000333496 A0A1B0GUA9 196 aa17.48■□□□□ 0.39
CLN3-201ENST00000333496 OFD1O75665 1012 aa17.48■□□□□ 0.39
CLN3-201ENST00000333496 PLCG1P19174 1290 aa17.48■□□□□ 0.39
CLN3-201ENST00000333496 NCLP19338 710 aaKnown RBP17.48■□□□□ 0.39
CLN3-201ENST00000333496 GUCY2CP25092 1073 aa17.48■□□□□ 0.39
CLN3-201ENST00000333496 PPP2R5AQ15172 486 aa17.48■□□□□ 0.39
CLN3-201ENST00000333496 NAALADL2Q58DX5 795 aa17.48■□□□□ 0.39
CLN3-201ENST00000333496 ARSHQ5FYA8 562 aa17.48■□□□□ 0.39
CLN3-201ENST00000333496 SPOUT1Q5T280 376 aaKnown RBP17.48■□□□□ 0.39
CLN3-201ENST00000333496 ZBTB8OSQ8IWT0 167 aa17.48■□□□□ 0.39
CLN3-201ENST00000333496 LRRC43Q8N309 656 aa17.48■□□□□ 0.39
CLN3-201ENST00000333496 IFT74Q96LB3 600 aa17.48■□□□□ 0.39
CLN3-201ENST00000333496 PRIMPOLQ96LW4 560 aa17.48■□□□□ 0.39
CLN3-201ENST00000333496 C2orf40Q9H1Z8 148 aa17.48■□□□□ 0.39
CLN3-201ENST00000333496 TFIP11Q9UBB9 837 aaKnown RBP17.48■□□□□ 0.39
CLN3-201ENST00000333496 USP20Q9Y2K6 914 aa17.48■□□□□ 0.39
CLN3-201ENST00000333496 IPPQ9Y573 584 aa17.48■□□□□ 0.39
CLN3-201ENST00000333496 SFI1A8K8P3 1242 aa17.47■□□□□ 0.39
CLN3-201ENST00000333496 F13A1P00488 732 aa17.47■□□□□ 0.39
CLN3-201ENST00000333496 SSBP05455 408 aaKnown RBP eCLIP17.47■□□□□ 0.39
CLN3-201ENST00000333496 PDIA4P13667 645 aaKnown RBP17.47■□□□□ 0.39
CLN3-201ENST00000333496 AFF1P51825 1210 aaKnown RBP17.47■□□□□ 0.39
CLN3-201ENST00000333496 PEX3P56589 373 aa17.47■□□□□ 0.39
CLN3-201ENST00000333496 RAD51AP2Q09MP3 1159 aa17.47■□□□□ 0.39
CLN3-201ENST00000333496 PTPROQ16827 1216 aa17.47■□□□□ 0.39
CLN3-201ENST00000333496 LINC00301Q8NCQ3 95 aa17.47■□□□□ 0.39
CLN3-201ENST00000333496 DEPTORQ8TB45 409 aa17.47■□□□□ 0.39
CLN3-201ENST00000333496 PGBD4Q96DM1 585 aa17.47■□□□□ 0.39
CLN3-201ENST00000333496 CCDC51Q96ER9 411 aa17.47■□□□□ 0.39
CLN3-201ENST00000333496 RNF39Q9H2S5 420 aa17.47■□□□□ 0.39
CLN3-201ENST00000333496 HES2Q9Y543 173 aa17.47■□□□□ 0.39
CLN3-201ENST00000333496 CNTNAP2Q9UHC6 1331 aa17.47■□□□□ 0.39
CLN3-201ENST00000333496 PBX3P40426 434 aa17.47■□□□□ 0.39
CLN3-201ENST00000333496 NPTX2P47972 431 aa17.47■□□□□ 0.39
CLN3-201ENST00000333496 NCBP1Q09161 790 aaKnown RBP17.47■□□□□ 0.39
CLN3-201ENST00000333496 MAPK6Q16659 721 aa17.47■□□□□ 0.39
CLN3-201ENST00000333496 SYMPKQ92797 1274 aaKnown RBP17.47■□□□□ 0.39
CLN3-201ENST00000333496 LMAN2LQ9H0V9 348 aa17.47■□□□□ 0.39
CLN3-201ENST00000333496 AAASQ9NRG9 546 aa17.47■□□□□ 0.39
CLN3-201ENST00000333496 PCDHB12Q9Y5F1 795 aa17.47■□□□□ 0.39
CLN3-201ENST00000333496 NPHP3-ACAD11A0A0J9YXS1 232 aa17.46■□□□□ 0.39
CLN3-201ENST00000333496 ACKR2O00590 384 aa17.46■□□□□ 0.39
CLN3-201ENST00000333496 PRKCBP05771 671 aa17.46■□□□□ 0.39
CLN3-201ENST00000333496 LAG3P18627 525 aa17.46■□□□□ 0.39
CLN3-201ENST00000333496 BECN1Q14457 450 aa17.46■□□□□ 0.39
CLN3-201ENST00000333496 MCM6Q14566 821 aa17.46■□□□□ 0.39
CLN3-201ENST00000333496 NOMO2Q5JPE7 1267 aa17.46■□□□□ 0.39
CLN3-201ENST00000333496 SLC27A1Q6PCB7 646 aa17.46■□□□□ 0.39
CLN3-201ENST00000333496 KCNT2Q6UVM3 1135 aa17.46■□□□□ 0.39
CLN3-201ENST00000333496 GLB1LQ6UWU2 654 aa17.46■□□□□ 0.39
CLN3-201ENST00000333496 CNNM3Q8NE01 707 aa17.46■□□□□ 0.39
CLN3-201ENST00000333496 POF1BQ8WVV4 589 aa17.46■□□□□ 0.39
CLN3-201ENST00000333496 RAD54LQ92698 747 aa17.46■□□□□ 0.39
CLN3-201ENST00000333496 DRC1Q96MC2 740 aa17.46■□□□□ 0.39
CLN3-201ENST00000333496 TIPINQ9BVW5 301 aa17.46■□□□□ 0.39
CLN3-201ENST00000333496 MRPL9Q9BYD2 267 aaKnown RBP17.46■□□□□ 0.39
CLN3-201ENST00000333496 RSAD1Q9HA92 442 aa17.46■□□□□ 0.39
CLN3-201ENST00000333496 TBC1D13Q9NVG8 400 aa17.46■□□□□ 0.39
CLN3-201ENST00000333496 KCND2Q9NZV8 630 aa17.46■□□□□ 0.39
CLN3-201ENST00000333496 INPP5FQ9Y2H2 1132 aa17.46■□□□□ 0.39
CLN3-201ENST00000333496 TCF20Q9UGU0 1960 aaKnown RBP17.45■□□□□ 0.38
CLN3-201ENST00000333496 CCDC169A6NNP5 214 aa17.45■□□□□ 0.38
CLN3-201ENST00000333496 FGF18O76093 207 aa17.45■□□□□ 0.38
CLN3-201ENST00000333496 NPTXRO95502 500 aa17.45■□□□□ 0.38
CLN3-201ENST00000333496 LIG1P18858 919 aa17.45■□□□□ 0.38
CLN3-201ENST00000333496 CACNB1Q02641 598 aaPredicted RBP17.45■□□□□ 0.38
CLN3-201ENST00000333496 PRPF4BQ13523 1007 aaKnown RBP17.45■□□□□ 0.38
CLN3-201ENST00000333496 DHX8Q14562 1220 aaKnown RBP17.45■□□□□ 0.38
CLN3-201ENST00000333496 SKIV2LQ15477 1246 aaKnown RBP17.45■□□□□ 0.38
CLN3-201ENST00000333496 FOXD4L6Q3SYB3 417 aaPredicted RBP17.45■□□□□ 0.38
CLN3-201ENST00000333496 FOXD4L3Q6VB84 417 aaPredicted RBP17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms