RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 B4GALT4O60513 344 aa4.42□□□□□ -1.7
HMGB1-201ENST00000326004 TMEM127O75204 238 aa4.42□□□□□ -1.7
HMGB1-201ENST00000326004 ZRANB2O95218 330 aaKnown RBP eCLIP4.42□□□□□ -1.7
HMGB1-201ENST00000326004 PARNO95453 639 aaKnown RBP4.42□□□□□ -1.7
HMGB1-201ENST00000326004 SCGB1D2O95969 90 aa4.42□□□□□ -1.7
HMGB1-201ENST00000326004 JUNP05412 331 aaKnown RBP4.42□□□□□ -1.7
HMGB1-201ENST00000326004 VSIG10L2P0DP72 767 aa4.42□□□□□ -1.7
HMGB1-201ENST00000326004 PF4V1P10720 104 aa4.42□□□□□ -1.7
HMGB1-201ENST00000326004 AKAP5P24588 427 aa4.42□□□□□ -1.7
HMGB1-201ENST00000326004 WASP42768 502 aa4.42□□□□□ -1.7
HMGB1-201ENST00000326004 KIR2DL3P43628 341 aa4.42□□□□□ -1.7
HMGB1-201ENST00000326004 CCT2P78371 535 aaKnown RBP4.42□□□□□ -1.7
HMGB1-201ENST00000326004 HGFACQ04756 655 aa4.42□□□□□ -1.7
HMGB1-201ENST00000326004 TCIRG1Q13488 830 aa4.42□□□□□ -1.7
HMGB1-201ENST00000326004 THEMISQ8N1K5 641 aaPredicted RBP4.42□□□□□ -1.7
HMGB1-201ENST00000326004 MIER2Q8N344 545 aa4.42□□□□□ -1.7
HMGB1-201ENST00000326004 GPR156Q8NFN8 814 aa4.42□□□□□ -1.7
HMGB1-201ENST00000326004 SNX33Q8WV41 574 aa4.42□□□□□ -1.7
HMGB1-201ENST00000326004 JPH3Q8WXH2 748 aaPredicted RBP4.42□□□□□ -1.7
HMGB1-201ENST00000326004 KRTAP9-2Q9BYQ4 174 aa4.42□□□□□ -1.7
HMGB1-201ENST00000326004 SEC61A2Q9H9S3 476 aa4.42□□□□□ -1.7
HMGB1-201ENST00000326004 RBM12Q9NTZ6 932 aaKnown RBP4.42□□□□□ -1.7
HMGB1-201ENST00000326004 CHPF2Q9P2E5 772 aa4.42□□□□□ -1.7
HMGB1-201ENST00000326004 TUBD1Q9UJT1 453 aa4.42□□□□□ -1.7
HMGB1-201ENST00000326004 PTPN22Q9Y2R2 807 aa4.42□□□□□ -1.7
HMGB1-201ENST00000326004 NR2E1Q9Y466 385 aa4.42□□□□□ -1.7
HMGB1-201ENST00000326004 RBM8AQ9Y5S9 174 aaKnown RBP4.42□□□□□ -1.7
HMGB1-201ENST00000326004 RPTORQ8N122 1335 aa4.42□□□□□ -1.7
HMGB1-201ENST00000326004 NRP1O14786 923 aa4.41□□□□□ -1.7
HMGB1-201ENST00000326004 PRAMEF4O60810 478 aa4.41□□□□□ -1.7
HMGB1-201ENST00000326004 ALDH1A2O94788 518 aa4.41□□□□□ -1.7
HMGB1-201ENST00000326004 IL33O95760 270 aa4.41□□□□□ -1.7
HMGB1-201ENST00000326004 CTSSP25774 331 aa4.41□□□□□ -1.7
HMGB1-201ENST00000326004 CYP2C19P33261 490 aa4.41□□□□□ -1.7
HMGB1-201ENST00000326004 ADCY7P51828 1080 aa4.41□□□□□ -1.7
HMGB1-201ENST00000326004 RAC3P60763 192 aa4.41□□□□□ -1.7
HMGB1-201ENST00000326004 PPP2CBP62714 309 aa4.41□□□□□ -1.7
HMGB1-201ENST00000326004 PPP2CAP67775 309 aa4.41□□□□□ -1.7
HMGB1-201ENST00000326004 KIF23Q02241 960 aaPredicted RBP4.41□□□□□ -1.7
HMGB1-201ENST00000326004 UBE3CQ15386 1083 aa4.41□□□□□ -1.7
HMGB1-201ENST00000326004 NXNQ6DKJ4 435 aa4.41□□□□□ -1.7
HMGB1-201ENST00000326004 CXorf57Q6NSI4 855 aaKnown RBP4.41□□□□□ -1.7
HMGB1-201ENST00000326004 ARHGEF18Q6ZSZ5 1173 aa4.41□□□□□ -1.7
HMGB1-201ENST00000326004 OR14K1Q8NGZ2 314 aa4.41□□□□□ -1.7
HMGB1-201ENST00000326004 RIN2Q8WYP3 895 aaPredicted RBP4.41□□□□□ -1.7
HMGB1-201ENST00000326004 AIFM3Q96NN9 605 aa4.41□□□□□ -1.7
HMGB1-201ENST00000326004 KCNC2Q96PR1 638 aa4.41□□□□□ -1.7
HMGB1-201ENST00000326004 PUF60Q9UHX1 559 aaKnown RBP4.41□□□□□ -1.7
HMGB1-201ENST00000326004 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.4□□□□□ -1.71
HMGB1-201ENST00000326004 AKR1B10O60218 316 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 MARCH6O60337 910 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 DTNBO60941 627 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 TOX4O94842 621 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 ENDOD1O94919 500 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 CNOT4O95628 575 aaKnown RBP4.4□□□□□ -1.71
HMGB1-201ENST00000326004 GSPT1P15170 499 aaKnown RBP4.4□□□□□ -1.71
HMGB1-201ENST00000326004 GYPEP15421 78 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 BMP7P18075 431 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 EPHB4P54760 987 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 BPIFB4P59827 614 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 ATP2C1P98194 919 aaPredicted RBP4.4□□□□□ -1.71
HMGB1-201ENST00000326004 PPP3CAQ08209 521 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 MGAT2Q10469 447 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 GTF2H3Q13889 308 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 TBR1Q16650 682 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 RNF151Q2KHN1 245 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 MST1LQ2TV78 715 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 UAP1L1Q3KQV9 507 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 FAM102BQ5T8I3 360 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 KRT40Q6A162 431 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 FRMD5Q7Z6J6 570 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 FMNL3Q8IVF7 1028 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 TCEAL8Q8IYN2 117 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 PPM1NQ8N819 430 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 SYT8Q8NBV8 401 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 ZNF480Q8WV37 535 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 RABGGTAQ92696 567 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 COA7Q96BR5 231 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 DNM3Q9UQ16 869 aa4.4□□□□□ -1.71
HMGB1-201ENST00000326004 KRTAP9-6A0A140TA67 174 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 LAMTOR5O43504 91 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 SLC26A4O43511 780 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 GASTP01350 101 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 ECHS1P30084 290 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 CRHR1P34998 444 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 ADAM8P78325 824 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 LRRC41Q15345 812 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 HSP90AB2PQ58FF8 381 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 RRP12Q5JTH9 1297 aaKnown RBP4.39□□□□□ -1.71
HMGB1-201ENST00000326004 ZFYVE27Q5T4F4 411 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 PPP4R3AQ6IN85 833 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 ABHD15Q6UXT9 468 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 LCNL1Q6ZST4 164 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 MIGA2Q7L4E1 593 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 MYO1HQ8N1T3 1032 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 MSL3Q8N5Y2 521 aaKnown RBP4.39□□□□□ -1.71
HMGB1-201ENST00000326004 ANKRD53Q8N9V6 530 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 NRG4Q8WWG1 115 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 CFHR4Q92496 578 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 HDAC10Q969S8 669 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms